SMTL ID : 6m5s.1 (2 other biounits)

The coordinates of the apo hexameric terminase complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-6-mer

Ligands

12 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: C.120, H.123 Chain C: C.90, H.92 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain B Metal complexes: C:C.90, B:C.120, B:H.123 ZN.2: 5 residues within 4Å: Chain B: C.196, C.199, C.222, N.223, H.224 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.196, B:C.199, B:C.222, B:H.224 ZN.3: 4 residues within 4Å: Chain E: C.120, H.123 Chain F: C.90, H.92 3 PLIP interactions: 2 interactions with chain E, 1 interactions with chain F Metal complexes: E:C.120, E:H.123, F:C.90 ZN.4: 5 residues within 4Å: Chain E: C.196, C.199, C.222, N.223, H.224 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.196, E:C.199, E:C.222, E:H.224 ZN.5: 4 residues within 4Å: Chain H: C.120, H.123 Chain I: C.90, H.92 3 PLIP interactions: 1 interactions with chain I, 2 interactions with chain H Metal complexes: I:C.90, H:C.120, H:H.123 ZN.6: 5 residues within 4Å: Chain H: C.196, C.199, C.222, N.223, H.224 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.196, H:C.199, H:C.222, H:H.224 ZN.7: 4 residues within 4Å: Chain K: C.120, H.123 Chain L: C.90, H.92 3 PLIP interactions: 2 interactions with chain K, 1 interactions with chain L Metal complexes: K:C.120, K:H.123, L:C.90 ZN.8: 5 residues within 4Å: Chain K: C.196, C.199, C.222, N.223, H.224 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.196, K:C.199, K:C.222, K:H.224 ZN.9: 4 residues within 4Å: Chain N: C.120, H.123 Chain O: C.90, H.92 3 PLIP interactions: 2 interactions with chain N, 1 interactions with chain O Metal complexes: N:C.120, N:H.123, O:C.90 ZN.10: 5 residues within 4Å: Chain N: C.196, C.199, C.222, N.223, H.224 4 PLIP interactions: 4 interactions with chain N Metal complexes: N:C.196, N:C.199, N:C.222, N:H.224 ZN.11: 4 residues within 4Å: Chain Q: C.120, H.123 Chain R: C.90, H.92 3 PLIP interactions: 2 interactions with chain Q, 1 interactions with chain R Metal complexes: Q:C.120, Q:H.123, R:C.90 ZN.12: 5 residues within 4Å: Chain Q: C.196, C.199, C.222, N.223, H.224 4 PLIP interactions: 4 interactions with chain Q Metal complexes: Q:C.196, Q:C.199, Q:C.222, Q:H.224

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, Y. et al., Architecture of the herpesvirus genome-packaging complex and implications for DNA translocation. Protein Cell (2020)

Release Date

2020-10-28

Peptides

Tripartite terminase subunit 3: ADGJMP
Tripartite terminase subunit 1: BEHKNQ
Tripartite terminase subunit 2: CFILOR

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

G
A

J
A

M
A

P
A

B
B

E
B

H
B

K
B

N
B

Q
B

C
C

F
C

I
C

L
C

O
C

R
C

Tripartite terminase subunit 3

Tripartite terminase subunit 1

Tripartite terminase subunit 2

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