SMTL ID : 6m6t.7 (7 other biounits)

Amylomaltase from Streptococcus agalactiae in complex with acarbose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

monomer

Ligands

1 x GLC- GLC- AC1: 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose

GLC-GLC-AC1.1: 17 residues within 4Å: Chain A: F.54, G.55, S.57, Y.59, Q.60, L.260, W.261, D.296, E.343, H.396, D.397, N.461, P.463, N.464, T.465, V.466 Ligands: GLC-AC1.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.60, A:Q.60, A:L.260, A:T.465, A:S.57, A:Q.60, A:N.461, A:N.464

1 x GLC- AC1: 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-AC1.2: 12 residues within 4Å: Chain A: D.252, Q.259, H.297, E.343, L.345, G.346, Y.347, I.348, F.369, D.380, D.397 Ligands: GLC-GLC-AC1.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.343, A:E.343, A:L.345, A:Y.347, A:Y.347, A:D.397, A:G.346

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tumhom, S. et al., Streptococcus agalactiae amylomaltase offers insight into the transglycosylation mechanism and the molecular basis of thermostability among amylomaltases. Sci Rep (2021)

Release Date

2021-03-31

Peptides

4-alpha-glucanotransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

4-alpha-glucanotransferase

Related Entries With Identical Sequence