SMTL ID : 6m8f.1

Engineered sperm whale myoglobin-based carbene transferase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

1 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 5 residues within 4Å: Chain A: T.68, A.72, P.89, L.90 Ligands: HEM.3 1 PLIP interactions: 1 interactions with chain A Water bridges: A:A.72

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: G.125, A.126, D.127 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.126, A:D.127 Water bridges: A:G.125, A:G.125, A:A.128 SO4.4: 3 residues within 4Å: Chain A: S.4, G.6, E.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.4, A:G.6 Water bridges: A:E.7 SO4.5: 3 residues within 4Å: Chain A: T.52, E.53, A.54 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.53

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.3: 22 residues within 4Å: Chain A: L.33, T.40, K.43, F.44, R.46, V.65, T.68, A.69, A.72, L.73, I.76, L.90, S.93, H.94, H.98, I.100, Y.104, L.105, I.108, I.112, F.139 Ligands: GLC-FRU.1 19 PLIP interactions: 18 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:F.44, A:F.44, A:F.44, A:T.68, A:A.72, A:L.90, A:I.100, A:Y.104, A:I.108, A:I.108, A:F.139 Hydrogen bonds: A:S.93 Water bridges: A:P.89 Salt bridges: A:R.46, A:H.94, A:H.98 pi-Stacking: A:H.98 Metal complexes: A:H.94, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tinoco, A. et al., Origin of high stereocontrol in olefin cyclopropanation catalyzed by an engineered carbene transferase. Acs Catalysis (2019)

Release Date

2019-01-23

Peptides

Myoglobin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Myoglobin