SMTL ID : 6m9k.1

Crystal structure of lambda exonuclease in complex with the Red beta C-terminal domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-3-3-mer

Ligands

16 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: R.28, T.33, A.34, S.35, C.116, S.117, Q.157 Ligand excluded by PLIP SO4.2: 3 residues within 4Å: Chain A: R.108, R.166, R.191 Ligand excluded by PLIP SO4.3: 3 residues within 4Å: Chain A: K.141, K.151, S.152 Ligand excluded by PLIP SO4.4: 4 residues within 4Å: Chain A: I.41, K.194, Y.195, S.198 Ligand excluded by PLIP SO4.5: 2 residues within 4Å: Chain A: K.131, Y.154 Ligand excluded by PLIP SO4.6: 7 residues within 4Å: Chain B: R.28, T.33, A.34, S.35, C.116, S.117, Q.157 Ligand excluded by PLIP SO4.7: 2 residues within 4Å: Chain B: R.108, R.166 Ligand excluded by PLIP SO4.8: 2 residues within 4Å: Chain B: K.151, S.152 Ligand excluded by PLIP SO4.9: 3 residues within 4Å: Chain B: K.194, Y.195, S.198 Ligand excluded by PLIP SO4.10: 7 residues within 4Å: Chain C: R.28, T.33, A.34, S.35, C.116, S.117, Q.157 Ligand excluded by PLIP SO4.11: 4 residues within 4Å: Chain C: R.108, W.163, R.166, D.200 Ligand excluded by PLIP SO4.12: 2 residues within 4Å: Chain C: K.151, S.152 Ligand excluded by PLIP SO4.13: 3 residues within 4Å: Chain C: K.194, Y.195, S.198 Ligand excluded by PLIP SO4.14: 2 residues within 4Å: Chain C: K.131, Y.154 Ligand excluded by PLIP SO4.15: 2 residues within 4Å: Chain C: R.166, N.168 Ligand excluded by PLIP SO4.16: 3 residues within 4Å: Chain F: K.21, K.60, Q.64 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Caldwell, B.J. et al., Crystal structure of the Red beta C-terminal domain in complex with lambda Exonuclease reveals an unexpected homology with lambda Orf and an interaction with Escherichia coli single stranded DNA binding protein. Nucleic Acids Res. (2019)

Release Date

2019-01-02

Peptides

Exonuclease: ABC
Recombination protein bet: DEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Exonuclease

Recombination protein bet