SMTL ID : 6ma2.1

Crystal structure of human O-GlcNAc transferase bound to a peptide from HCF-1 pro-repeat 2 (11-26) and inhibitor ent-1a

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x J9S: N-[(2S)-2-(2-methoxyphenyl)-2-{[(2-oxo-1,2-dihydroquinolin-6-yl)sulfonyl]amino}acetyl]-N-[(thiophen-2-yl)methyl]glycine(Non-covalent)

J9S.1: 16 residues within 4Å: Chain A: N.249, H.250, P.251, H.254, F.529, Q.531, L.558, F.560, V.587, A.588, P.589, K.590, H.593, R.596, T.613, T.614 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:P.251, A:L.558, A:V.587, A:K.590 Hydrogen bonds: A:Q.531, A:A.588, A:A.588, A:K.590, A:R.596 pi-Stacking: A:H.593

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Martin, S.E.S. et al., Structure-Based Evolution of Low Nanomolar O-GlcNAc Transferase Inhibitors. J. Am. Chem. Soc. (2018)

Release Date

2018-10-17

Peptides

UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit: A
Host Cell Factor 1 peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit

Host Cell Factor 1 peptide

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