SMTL ID : 6mai.1

Crystal structure of Deoxyuridine 5'-triphosphate nucleotidohydrolase from Legionella pneumophila Philadelphia 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-trimer

Ligands

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: I.76, L.90, N.92, G.95, K.106, I.107, S.108 Ligands: EDO.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.92, A:S.108, A:S.108 Water bridges: A:L.96 EDO.2: 4 residues within 4Å: Chain A: I.45, S.46, E.47, M.49 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.46, A:S.46, A:E.47 EDO.3: 6 residues within 4Å: Chain A: I.97, Y.101, E.104, L.105, K.106 Ligands: EDO.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.104, A:K.106 Water bridges: A:L.96 EDO.4: 3 residues within 4Å: Chain A: R.79, D.123, R.124 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.79, A:R.79, A:R.124, A:R.124 Water bridges: A:G.122 EDO.5: 8 residues within 4Å: Chain B: I.76, L.90, N.92, G.95, K.106, I.107, S.108 Ligands: EDO.7 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.92, B:S.108, B:S.108 Water bridges: B:L.96 EDO.6: 4 residues within 4Å: Chain B: I.45, S.46, E.47, M.49 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.46, B:S.46, B:E.47 EDO.7: 6 residues within 4Å: Chain B: I.97, Y.101, E.104, L.105, K.106 Ligands: EDO.5 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.104, B:K.106 Water bridges: B:L.96 EDO.8: 3 residues within 4Å: Chain B: R.79, D.123, R.124 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.79, B:R.79, B:R.124, B:R.124 Water bridges: B:G.122 EDO.9: 8 residues within 4Å: Chain C: I.76, L.90, N.92, G.95, K.106, I.107, S.108 Ligands: EDO.11 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:N.92, C:S.108, C:S.108 Water bridges: C:L.96 EDO.10: 4 residues within 4Å: Chain C: I.45, S.46, E.47, M.49 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.46, C:S.46, C:E.47 EDO.11: 6 residues within 4Å: Chain C: I.97, Y.101, E.104, L.105, K.106 Ligands: EDO.9 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:E.104, C:K.106 Water bridges: C:L.96 EDO.12: 3 residues within 4Å: Chain C: R.79, D.123, R.124 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:R.79, C:R.79, C:R.124, C:R.124 Water bridges: C:G.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abendroth, J. et al., Crystal structure of Deoxyuridine 5'-triphosphate nucleotidohydrolase from Legionella pneumophila Philadelphia 1. TO BE PUBLISHED

Release Date

2018-09-05

Peptides

Deoxyuridine 5'-triphosphate nucleotidohydrolase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Deoxyuridine 5'-triphosphate nucleotidohydrolase

Related Entries With Identical Sequence