SMTL ID : 6mam.1

Cleaved Ebola GP in complex with a broadly neutralizing human antibody, ADI-15946

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 4.10 Å

Oligo State

hetero-3-3-3-3-mer

Ligands

2 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.1: 10 residues within 4Å: Chain G: L.39, E.125, G.126, A.127, V.149 Chain H: Q.7, P.8, N.62, T.65 Chain J: L.28 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.3: 5 residues within 4Å: Chain K: E.125, V.149 Chain L: Q.7, N.62, T.65 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.2: 8 residues within 4Å: Chain I: E.125, G.126, A.127, V.149 Chain J: Q.7, P.8, N.62, T.65 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:E.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

West, B.R. et al., Structural basis of broad ebolavirus neutralization by a human survivor antibody. Nat. Struct. Mol. Biol. (2019)

Release Date

2019-03-20

Peptides

ADI-15946 Fab Heavy Chain: ACE
ADI-15946 Fab Light Chain: BDF
Envelope glycoprotein: GIK
Envelope glycoprotein: HJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

G
G

I
I

K
K

H
H

J
J

L
L

ADI-15946 Fab Heavy Chain

ADI-15946 Fab Light Chain

Envelope glycoprotein

Envelope glycoprotein