SMTL ID : 6mbj.2 (1 other biounit)

SETD3, a Histidine Methyltransferase, in Complex with an Actin Peptide and SAH, P21 Crystal Form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 18 residues within 4Å: Chain A: H.8 Chain B: R.80, E.108, E.109, F.111, P.185, T.258, R.259, D.280, M.281, C.282, N.283, H.284, Y.318, S.330, G.331, F.332, F.334 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:F.111, B:F.111, B:F.111, B:N.283, B:H.284, B:H.284, B:Y.318, B:G.331 Water bridges: B:R.80, B:E.109, B:E.109, B:T.258, B:T.258 Salt bridges: B:R.80, B:R.259 pi-Stacking: B:F.332, B:F.332

16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: E.7 Chain B: I.289, G.319, T.320 Ligand excluded by PLIP EDO.3: 1 residues within 4Å: Chain B: I.413 Ligand excluded by PLIP EDO.4: 6 residues within 4Å: Chain B: F.333, V.464, K.467, M.468, K.471 Ligands: EDO.7 Ligand excluded by PLIP EDO.5: 3 residues within 4Å: Chain B: R.66, K.67, Q.69 Ligand excluded by PLIP EDO.6: 4 residues within 4Å: Chain B: E.187, Y.188, D.189 Ligands: EDO.12 Ligand excluded by PLIP EDO.7: 3 residues within 4Å: Chain B: E.108, V.464 Ligands: EDO.4 Ligand excluded by PLIP EDO.8: 4 residues within 4Å: Chain B: L.346, G.347, F.393, R.438 Ligand excluded by PLIP EDO.9: 3 residues within 4Å: Chain B: M.88, K.89, S.92 Ligand excluded by PLIP EDO.10: 9 residues within 4Å: Chain B: S.322, N.323, A.324, D.340, R.341, V.342, L.472, G.475, E.476 Ligand excluded by PLIP EDO.11: 3 residues within 4Å: Chain B: H.339, R.341, H.376 Ligand excluded by PLIP EDO.12: 4 residues within 4Å: Chain B: P.185, S.186, E.187 Ligands: EDO.6 Ligand excluded by PLIP EDO.13: 5 residues within 4Å: Chain B: I.30, Q.69, Y.226, S.243, F.244 Ligand excluded by PLIP EDO.14: 4 residues within 4Å: Chain B: K.70, G.71, L.72, T.75 Ligand excluded by PLIP EDO.15: 7 residues within 4Å: Chain B: H.403, R.412, T.415, L.416, F.421, P.422, V.423 Ligand excluded by PLIP EDO.16: 4 residues within 4Å: Chain B: E.63, R.66, Y.193, R.250 Ligand excluded by PLIP EDO.17: 2 residues within 4Å: Chain B: W.127, R.299 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wilkinson, A.W. et al., SETD3 is an actin histidine methyltransferase that prevents primary dystocia. Nature (2019)

Release Date

2018-12-19

Peptides

Actin Peptide: A
Histone-lysine N-methyltransferase setd3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
Z

B
B

Actin Peptide

Histone-lysine N-methyltransferase setd3

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