SMTL ID : 6mca.1

Structure of Legionella Effector AnkH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.46 Å

Oligo State

monomer

Ligands

2 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.1: 7 residues within 4Å: Chain A: T.87, R.89, T.118, R.119, N.120, Y.127, I.187 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:T.87, A:T.87, A:T.118, A:T.118, A:R.119, A:N.120, A:N.120, A:Y.127 Water bridges: A:R.89, A:R.89 Salt bridges: A:R.89, A:R.119 TLA.2: 6 residues within 4Å: Chain A: H.33, T.65, R.66, H.237, Q.243, H.244 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:T.65, A:Q.243 Water bridges: A:I.64, A:R.66, A:H.244 Salt bridges: A:H.33, A:R.66, A:H.237, A:H.244

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: E.164, R.282, S.340, Y.380 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.282, A:R.282, A:S.340, A:Y.380 Water bridges: A:S.340, A:Y.380 GOL.4: 6 residues within 4Å: Chain A: L.252, K.253, A.254, P.255, R.272, H.274 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.252, A:P.255, A:H.274 Water bridges: A:R.272 GOL.5: 5 residues within 4Å: Chain A: H.33, M.35, Q.67, K.69, I.70 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:M.35, A:Q.67 Water bridges: A:H.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Von Dwingelo, J. et al., Interaction of the Ankyrin H Core Effector ofLegionellawith the Host LARP7 Component of the 7SK snRNP Complex. Mbio (2019)

Release Date

2019-09-04

Peptides

Ankyrin repeat domain protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ankyrin repeat domain protein