- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.68 Å
- Oligo State
- monomer
- Ligands
- 1 x U2A- BGC: beta-D-glucopyranose-(1-2)-methyl 2-thio-beta-D-glucopyranoside(Non-covalent)
- 3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 10 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 10 residues within 4Å:- Chain A: D.99, F.148, R.162, K.210, H.211, M.254, D.289, W.434
- Ligands: U2A-BGC.1, 1PE.22
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.162, A:R.162, A:K.210
- Water bridges: A:D.99
GOL.6: 3 residues within 4Å:- Chain A: R.26, M.27, T.28
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.26
- Water bridges: A:L.29, A:R.89, A:R.89
GOL.7: 5 residues within 4Å:- Chain A: Q.379, R.382, G.448, T.449, E.553
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:G.448, A:T.449, A:T.449
- Water bridges: A:Q.379, A:Q.555, A:Q.555, A:Q.555
GOL.8: 5 residues within 4Å:- Chain A: F.467, A.468, E.469, N.470, P.471
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:E.469, A:N.470, A:N.470
- Water bridges: A:F.467, A:E.469, A:N.470
GOL.9: 2 residues within 4Å:- Chain A: R.390, K.391
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:R.390, A:R.390, A:K.391
- Water bridges: A:R.130, A:R.130, A:E.387, A:K.391
GOL.10: 3 residues within 4Å:- Chain A: T.298, P.299, A.300
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.298, A:A.300
GOL.11: 4 residues within 4Å:- Chain A: R.123, I.173, L.597, G.598
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.123, A:R.570
GOL.12: 10 residues within 4Å:- Chain A: R.156, D.157, P.158, E.169, R.573, T.574, L.582, P.583, M.584, N.585
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:E.169, A:R.573, A:T.574, A:M.584, A:N.585
GOL.13: 5 residues within 4Å:- Chain A: G.262, K.264, I.296, T.298
- Ligands: NAG.2
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:K.264, A:I.296, A:T.298, A:T.298
- Water bridges: A:S.259
GOL.14: 7 residues within 4Å:- Chain A: H.491, Y.493, K.497, G.498, N.500, R.530
- Ligands: NAG.3
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:G.498, A:N.500, A:R.530
- Water bridges: A:H.491, A:K.497
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.15: 3 residues within 4Å:- Chain A: P.342, M.343, S.344
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:M.343, A:S.344
SO4.16: 5 residues within 4Å:- Chain A: Q.175, T.178, E.179, N.244, K.248
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.179, A:N.244
- Salt bridges: A:K.248
- 6 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
1PE.17: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)1PE.18: 3 residues within 4Å:- Chain A: N.226, I.228
- Ligands: NAG.2
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.226
1PE.19: 2 residues within 4Å:- Chain A: Y.306, K.309
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Y.306
1PE.20: 4 residues within 4Å:- Chain A: L.594, F.595, R.596, Y.599
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.596, A:R.596
1PE.21: 3 residues within 4Å:- Chain A: E.374, K.378, E.380
No protein-ligand interaction detected (PLIP)1PE.22: 10 residues within 4Å:- Chain A: L.58, D.99, R.162, K.210, H.211, M.254, D.289, M.320
- Ligands: U2A-BGC.1, GOL.5
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:K.210
- Water bridges: A:R.162
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Streltsov, V.A. et al., Discovery of processive catalysis by an exo-hydrolase with a pocket-shaped active site. Nat Commun (2019)
- Release Date
- 2019-05-29
- Peptides
- Beta-D-glucan exohydrolase isoenzyme ExoI: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.68 Å
- Oligo State
- monomer
- Ligands
- 1 x U2A- BGC: beta-D-glucopyranose-(1-2)-methyl 2-thio-beta-D-glucopyranoside(Non-covalent)
- 3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 10 x GOL: GLYCEROL(Non-functional Binders)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 6 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Streltsov, V.A. et al., Discovery of processive catalysis by an exo-hydrolase with a pocket-shaped active site. Nat Commun (2019)
- Release Date
- 2019-05-29
- Peptides
- Beta-D-glucan exohydrolase isoenzyme ExoI: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A