SMTL ID : 6meh.1

Crystal structure of broadly neutralizing antibody HEPC74 in complex with Hepatitis C virus envelope glycoprotein E2 ectodomain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: N.47, S.49 Chain C: Y.49, S.53 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 5 residues within 4Å: Chain A: N.173, S.174, T.175, F.177, K.179 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain A: N.40, Y.144 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.144 Hydrogen bonds: A:N.40 Water bridges: A:N.40 NAG.4: 9 residues within 4Å: Chain A: N.65, S.67 Chain B: Q.1, T.24, S.25, G.26, G.27, I.30, S.77 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:N.65, A:S.67, B:Q.1, B:G.26, B:G.27 NAG.5: 4 residues within 4Å: Chain A: K.63, A.66, V.239, N.240 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.66, A:V.239 Hydrogen bonds: A:K.63, A:N.240

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Flyak, A.I. et al., HCV Broadly Neutralizing Antibodies Use a CDRH3 Disulfide Motif to Recognize an E2 Glycoprotein Site that Can Be Targeted for Vaccine Design. Cell Host Microbe (2018)

Release Date

2018-11-21

Peptides

E2 glycoprotein: A
antibody HEPC74 Heavy Chain: B
antibody HEPC74 Light Chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
H

C
L

E2 glycoprotein

antibody HEPC74 Heavy Chain

antibody HEPC74 Light Chain

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