SMTL ID : 6mf2.1

Improved Model of Human Coagulation Factor VIII

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.61 Å

Oligo State

monomer

Ligands

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 8 residues within 4Å: Chain A: L.932, R.1049, V.1051, Q.1118, N.1298, I.1319, N.1321, P.1322 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.1051, A:Q.1118, A:Q.1118 NAG-NAG-BMA.2: 4 residues within 4Å: Chain A: M.18, M.232, N.240, D.319 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.3: 1 residues within 4Å: Chain A: N.990 No protein-ligand interaction detected (PLIP)

1 x CA: CALCIUM ION(Non-covalent)

CA.4: 4 residues within 4Å: Chain A: K.108, E.123, D.126, D.127 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:K.108, A:E.123, A:D.126, A:D.126, A:D.127

1 x ZN: ZINC ION(Non-covalent)

ZN.5: 5 residues within 4Å: Chain A: H.233, H.268, C.311, H.318, M.321 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.268, A:C.311, A:H.318

1 x CU1: COPPER (I) ION(Non-covalent)

CU1.6: 4 residues within 4Å: Chain A: H.1134, C.1180, I.1182, H.1185 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.1134, A:C.1180, A:H.1185

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, I.W. et al., The 3.2 angstrom structure of a bioengineered variant of blood coagulation factor VIII indicates two conformations of the C2 domain. J.Thromb.Haemost. (2020)

Release Date

2019-09-11

Peptides

Coagulation factor VIII: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Coagulation factor VIII