SMTL ID : 6mfo.1

Crystal Structure of Human Protocadherin-15 EC1-3 G16D N369D Q370N

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.15 Å

Oligo State

homo-dimer

Ligands

10 x CA: CALCIUM ION(Non-covalent)

CA.1: 7 residues within 4Å: Chain A: E.28, E.29, D.84, D.86, D.122, N.123 Ligands: CA.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.28, A:E.29, A:D.84, A:D.86, H2O.1 CA.2: 8 residues within 4Å: Chain A: E.28, D.86, D.119, R.120, D.122, N.123, D.160 Ligands: CA.1 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.28, A:D.86, A:R.120, A:D.122, A:D.160 CA.3: 6 residues within 4Å: Chain A: N.121, N.123, D.158, D.160, N.164, D.216 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.123, A:D.158, A:D.160, A:N.164, A:D.216 CA.4: 5 residues within 4Å: Chain A: D.239, L.241, D.288, D.290, Q.349 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.239, A:L.241, A:D.288, A:D.290 CA.5: 5 residues within 4Å: Chain A: E.138, D.237, G.238, D.240, D.290 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.138, A:D.237, A:G.238, A:D.240, A:D.290 CA.6: 7 residues within 4Å: Chain B: E.28, E.29, D.84, D.86, D.122, N.123 Ligands: CA.7 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.28, B:E.29, B:D.84, B:D.86, H2O.1 CA.7: 8 residues within 4Å: Chain B: E.28, D.86, D.119, R.120, D.122, N.123, D.160 Ligands: CA.6 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.28, B:D.86, B:R.120, B:D.122, B:D.160 CA.8: 6 residues within 4Å: Chain B: N.121, N.123, D.158, D.160, N.164, D.216 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:N.123, B:D.158, B:D.160, B:N.164, B:D.216 CA.9: 5 residues within 4Å: Chain B: D.239, L.241, D.288, D.290, Q.349 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.239, B:L.241, B:D.288, B:D.290 CA.10: 5 residues within 4Å: Chain B: E.138, D.237, G.238, D.240, D.290 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.138, B:D.237, B:G.238, B:D.240, B:D.290

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Choudhary, D. et al., Structural determinants of protocadherin-15 mechanics and function in hearing and balance perception. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2019-09-18

Peptides

Protocadherin-15: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protocadherin-15

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