SMTL ID : 6mfu.1 (1 other biounit)

Crystal structure of a Guanylate kinase from Cryptococcus neoformans var. grubii serotype A in complex with GDP and ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x 5GP: GUANOSINE-5'-MONOPHOSPHATE(Non-covalent)

5GP.1: 15 residues within 4Å: Chain A: K.32, S.52, R.56, R.59, Y.68, E.87, F.91, Y.96, G.97, T.98, D.114, I.115, E.116, G.119, R.167 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:G.26, A:S.52, A:Y.68, A:Y.96, A:T.98, A:D.114, A:E.116, A:G.119 Water bridges: A:R.59, A:R.59, A:R.167 Salt bridges: A:R.56, A:R.59, A:E.87, A:E.116, A:R.167 5GP.3: 16 residues within 4Å: Chain B: S.28, K.32, S.52, R.56, R.59, Y.68, E.87, F.91, Y.96, G.97, T.98, D.114, I.115, E.116, G.119, R.167 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:S.52, B:Y.68, B:D.114, B:E.116, B:G.119 Water bridges: B:G.26, B:R.59, B:R.59, B:R.167 Salt bridges: B:R.56, B:R.59, B:E.87, B:E.116, B:R.167

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 13 residues within 4Å: Chain A: P.27, S.28, G.29, T.30, G.31, K.32, S.33, T.34, R.152, R.156, N.189, D.190, L.192 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:S.28, A:G.29, A:T.30, A:G.31, A:K.32, A:S.33, A:T.34, A:T.34, A:N.189, A:D.190 Water bridges: A:K.32, A:K.32, A:S.33, A:S.33, A:T.34, A:R.152, A:R.152, A:R.152 Salt bridges: A:K.32, A:R.156, A:R.156 pi-Cation interactions: A:R.152 ADP.4: 13 residues within 4Å: Chain B: P.27, S.28, G.29, T.30, G.31, K.32, S.33, T.34, R.152, R.156, N.189, D.190, L.192 22 PLIP interactions: 22 interactions with chain B Hydrogen bonds: B:G.29, B:T.30, B:G.31, B:K.32, B:S.33, B:T.34, B:T.34, B:N.189, B:D.190 Water bridges: B:S.28, B:K.32, B:K.32, B:S.33, B:S.33, B:S.33, B:T.34, B:L.192, B:L.192 Salt bridges: B:K.32, B:R.156, B:R.156 pi-Cation interactions: B:R.152

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abendroth, J. et al., Crystal structure of a Guanylate kinase from Cryptococcus neoformans var. grubii serotype A in complex with GDP and ADP. TO BE PUBLISHED

Release Date

2018-09-26

Peptides

Guanylate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Guanylate kinase

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