SMTL ID : 6mg0.1 (1 other biounit)

Crystal structure of a 5-domain construct of LgrA in the thiolation state

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 6.00 Å

Oligo State

homo-dimer

Ligands

2 x DG9: 5'-({[(2R,3R)-3-amino-2-{[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-{[oxido(oxo)phosphonio]oxy}butanoyl]-beta-alanyl}amino)ethyl]sulfanyl}-4-methylpentyl]sulfonyl}amino)-5'-deoxyadenosine(Covalent)

DG9.1: 30 residues within 4Å: Chain A: Y.392, F.397, D.398, G.399, Y.423, Y.441, P.443, G.464, G.465, D.466, V.467, N.481, G.482, Y.483, G.484, P.485, T.486, I.490, M.491, D.570, R.585, K.591, R.593, G.594, Y.595, R.596, D.654, S.731, I.732, M.735 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:F.397, A:Y.423, A:Y.595, A:I.732 Hydrogen bonds: A:Y.392, A:G.465, A:G.482, A:G.484, A:T.486, A:T.486, A:D.570, A:R.585, A:K.591, A:K.591, A:G.594, A:Y.595, A:Y.595, A:R.596, A:D.654, A:S.731, A:Y.750 Salt bridges: A:R.593 DG9.2: 27 residues within 4Å: Chain B: Y.392, F.397, D.398, G.399, Y.423, Y.441, P.443, G.464, G.465, D.466, V.467, N.481, G.482, Y.483, G.484, P.485, T.486, I.490, M.491, D.570, K.591, R.593, G.594, Y.595, R.596, S.731, I.732 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:F.397, B:Y.423, B:I.732 Hydrogen bonds: B:G.465, B:D.466, B:G.482, B:G.484, B:T.486, B:D.570, B:K.591, B:K.591, B:G.594, B:Y.595, B:Y.595, B:R.596 Salt bridges: B:R.593

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reimer, J.M. et al., Structures of a dimodular nonribosomal peptide synthetase reveal conformational flexibility. Science (2019)

Release Date

2019-11-20

Peptides

Linear gramicidin synthase subunit A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Linear gramicidin synthase subunit A

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