SMTL ID : 6mge.1

Structure of human 4-1BBL

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

homo-trimer

Ligands

5 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: F.181, R.182, V.183 Chain B: V.183 Chain C: V.183 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.182 PO4.2: 6 residues within 4Å: Chain A: A.120, A.121, A.123, R.145 Chain B: G.174, A.175 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.120 Salt bridges: A:R.145 PO4.3: 4 residues within 4Å: Chain B: Y.69, K.70, E.71, D.72 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.71, B:D.72 Salt bridges: B:K.70 PO4.5: 3 residues within 4Å: Chain C: V.95, V.96, A.97 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:A.97 PO4.6: 4 residues within 4Å: Chain C: H.148, L.149, S.150, Q.153 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:S.150, C:S.150, C:Q.153 Salt bridges: C:H.148

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 9 residues within 4Å: Chain A: F.140, G.141, F.142 Chain B: F.140, G.141, F.142 Chain C: F.140, G.141, F.142 5 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B, 2 interactions with chain C Hydrogen bonds: A:F.142, B:F.142, B:F.142, C:F.142, C:F.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chin, S.M. et al., Structure of the 4-1BB/4-1BBL complex and distinct binding and functional properties of utomilumab and urelumab. Nat Commun (2018)

Release Date

2018-11-21

Peptides

Tumor necrosis factor ligand superfamily member 9: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Tumor necrosis factor ligand superfamily member 9

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