SMTL ID : 6mgf.1

untagged, wild-type LptB in complex with ADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.98 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: T.43, Q.85, E.163 Ligands: ADP.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.43

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 12 residues within 4Å: Chain A: Y.13, R.16, V.18, P.37, N.38, G.39, A.40, G.41, K.42, T.43, T.44 Ligands: MG.1 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:R.16, A:R.16, A:N.38, A:G.39, A:A.40, A:G.41, A:K.42, A:T.43, A:T.44, A:T.44 Water bridges: A:K.42 Salt bridges: A:K.42 pi-Stacking: A:Y.13

1 x CZJ: (3s,5s,7s)-N-{7-[(3-O-carbamoyl-6-deoxy-5-methyl-4-O-methyl-beta-D-gulopyranosyl)oxy]-4-hydroxy-8-methyl-2-oxo-2H-1-ben zopyran-3-yl}tricyclo[3.3.1.1~3,7~]decane-1-carboxamide(Non-covalent)

CZJ.3: 5 residues within 4Å: Chain A: F.90, R.92, L.93, A.101, Q.104 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.90, A:L.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Simpson, B. et al., Bypassing the requirement for coupling of ATP binding and hydrolysis in the lipopolysaccharide ABC transporte. not published

Release Date

2019-09-18

Peptides

Lipopolysaccharide export system ATP-binding protein LptB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lipopolysaccharide export system ATP-binding protein LptB

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