SMTL ID : 6mgz.1 (2 other biounits)

Crystal Structure of the New Deli Metallo Beta Lactamase Variant 4 from Klebsiella pneumoniae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.93, H.95, H.162, C.181 Ligands: ZN.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.93, A:H.95, A:H.162, H2O.2 ZN.2: 5 residues within 4Å: Chain A: D.97, C.181, H.223 Ligands: ZN.1, FMT.7 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.97, A:C.181, A:H.223, H2O.2 ZN.3: 3 residues within 4Å: Chain A: E.125, D.196 Ligands: FMT.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.125, A:E.125, A:D.196

4 x FMT: FORMIC ACID(Non-functional Binders)

FMT.4: 4 residues within 4Å: Chain A: H.95, E.125, D.196 Ligands: ZN.3 No protein-ligand interaction detected (PLIP) FMT.5: 1 residues within 4Å: Chain A: A.145 1 PLIP interactions: 1 interactions with chain A Water bridges: A:A.145 FMT.6: 2 residues within 4Å: Chain A: P.85, V.86 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.86 Water bridges: A:A.108, A:G.109 FMT.7: 7 residues within 4Å: Chain A: H.162, C.181, K.184, G.192, N.193, H.223 Ligands: ZN.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.184, A:N.193

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of the New Deli Metallo Beta Lactamase Variant 4 from Klebsiella pneumoniae. To Be Published

Release Date

2018-10-03

Peptides

NDM-4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NDM-4

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