SMTL ID : 6mh4.1

Crystal Structure of 1-deoxy-D-xylulose-5-phosphate reductoisomerase from Staphylococcus schleiferi, Apoenzyme

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: T.168, A.169, S.170, S.206, N.211, K.212 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.170, A:S.206, A:S.206, A:N.211 Water bridges: A:G.171 Salt bridges: A:K.212 SO4.2: 5 residues within 4Å: Chain A: S.10, V.35, G.36, K.37, N.38 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.10, A:G.36, A:K.37, A:N.38 Water bridges: A:S.10 SO4.3: 5 residues within 4Å: Chain A: M.198, G.199, N.200, K.201, I.202 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.199, A:N.200, A:K.201 SO4.4: 4 residues within 4Å: Chain A: T.186, V.187, G.188, H.333 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.186, A:G.188 Salt bridges: A:H.333 SO4.5: 8 residues within 4Å: Chain B: E.146, T.168, A.169, S.170, S.206, N.211, K.212, S.238 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.170, B:S.170, B:N.211, B:S.238 Water bridges: B:G.171, B:K.212 Salt bridges: B:K.212 SO4.6: 5 residues within 4Å: Chain B: S.10, V.35, G.36, K.37, N.38 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.10, B:S.10, B:G.36, B:N.38 SO4.7: 7 residues within 4Å: Chain B: R.23, H.24, R.261, Q.265, E.275, H.276, R.277 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:R.23, B:Q.265, B:R.277 Salt bridges: B:H.24, B:R.261, B:H.276, B:R.277

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Edwards, R.L. et al., Potent, specific MEPicides for treatment of zoonotic staphylococci. Plos Pathog. (2020)

Release Date

2020-03-18

Peptides

1-deoxy-D-xylulose 5-phosphate reductoisomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

1-deoxy-D-xylulose 5-phosphate reductoisomerase

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