SMTL ID : 6mhr.1 (1 other biounit)

Structure of the human 4-1BB / Urelumab Fab complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- BMA- FUC- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC-FUC.1: 3 residues within 4Å: Chain C: V.122, N.125 Ligands: EPE.3 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:V.122

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: G.54, G.55, Y.56 No protein-ligand interaction detected (PLIP)

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.3: 6 residues within 4Å: Chain C: T.113, N.114, C.115, S.116, V.122 Ligands: NAG-NAG-BMA-FUC-FUC.1 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:N.114, C:N.114, C:C.115, C:S.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chin, S.M. et al., Structure of the 4-1BB/4-1BBL complex and distinct binding and functional properties of utomilumab and urelumab. Nat Commun (2018)

Release Date

2018-11-21

Peptides

Urelumab Fab heavy chain: A
Urelumab Fab kappa chain: B
Tumor necrosis factor receptor superfamily member 9: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

Urelumab Fab heavy chain

Urelumab Fab kappa chain

Tumor necrosis factor receptor superfamily member 9

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