SMTL ID : 6mi7.1

Nucleotide-free Cryo-EM Structure of E.coli LptB2FGC

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-2-1-mer

Ligands

1 x PGT: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE(Non-covalent)

PGT.1: 9 residues within 4Å: Chain A: L.286, Y.338, L.341, L.345, W.348 Chain E: S.19, R.22, V.25, L.29 7 PLIP interactions: 3 interactions with chain A, 4 interactions with chain E Hydrophobic interactions: A:Y.338, A:L.341, A:L.345, E:V.25, E:L.29 Hydrogen bonds: E:S.19, E:S.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y. et al., Structural basis of lipopolysaccharide extraction by the LptB2FGC complex. Nature (2019)

Release Date

2019-04-03

Peptides

Lipopolysaccharide export system permease protein LptF: A
Lipopolysaccharide export system permease protein LptG: B
Lipopolysaccharide export system ATP-binding protein LptB: CD
Lipopolysaccharide export system protein LptC: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
G

C
A

D
B

E
C

Membrane

We predict this structure to be a membrane protein.
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Lipopolysaccharide export system permease protein LptF

Lipopolysaccharide export system permease protein LptG

Lipopolysaccharide export system ATP-binding protein LptB

Lipopolysaccharide export system protein LptC

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