SMTL ID : 6mij.1

Crystal structure of EF-Tu from Acinetobacter baumannii in complex with Mg2+ and GDP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: T.26 Ligands: GDP.2 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.26, H2O.1, H2O.2, H2O.3, H2O.6

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 17 residues within 4Å: Chain A: H.20, V.21, D.22, H.23, G.24, K.25, T.26, T.27, Y.47, N.136, K.137, D.139, L.140, S.174, A.175, L.176 Ligands: MG.1 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:D.22, A:H.23, A:G.24, A:K.25, A:T.26, A:T.27, A:T.27, A:N.136, A:K.137, A:K.137, A:S.174, A:A.175, A:L.176 Water bridges: A:T.26, A:T.26, A:T.26, A:T.26, A:T.27 Salt bridges: A:K.25, A:D.139

8 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 2 residues within 4Å: Chain A: L.146, L.149 No protein-ligand interaction detected (PLIP) FMT.4: 4 residues within 4Å: Chain A: D.139, L.176, A.177, E.182 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.174 FMT.5: 4 residues within 4Å: Chain A: L.326, N.327, G.328, Y.329 No protein-ligand interaction detected (PLIP) FMT.6: 5 residues within 4Å: Chain A: A.97, Q.98, M.99, V.126, G.127 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.97, A:M.99, A:R.376 FMT.7: 3 residues within 4Å: Chain A: K.255, G.283, E.288 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.288 FMT.8: 6 residues within 4Å: Chain A: D.22, H.23, A.107, T.109, D.110, K.137 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.109, A:T.109 FMT.9: 1 residues within 4Å: Chain A: K.38 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.38 FMT.10: 4 residues within 4Å: Chain A: P.112, M.113, P.114, R.117 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.112, A:R.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stogios, P.J., To be published. To Be Published

Release Date

2018-10-03

Peptides

Elongation factor Tu: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Elongation factor Tu