SMTL ID : 6mlm.1

H7 HA0 in complex with Fv from H7.5 IgG

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-3-mer

Ligands

9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: H.26, N.46 Chain B: W.24 No protein-ligand interaction detected (PLIP) NAG.2: 2 residues within 4Å: Chain A: R.178, N.241 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.178 NAG.3: 5 residues within 4Å: Chain A: R.301 Chain B: Q.78, G.81, N.82, N.85 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:R.301, A:R.301, B:N.85 Hydrophobic interactions: B:Q.78 NAG.4: 3 residues within 4Å: Chain E: H.26, N.46 Chain F: W.24 No protein-ligand interaction detected (PLIP) NAG.5: 2 residues within 4Å: Chain E: R.178, N.241 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:R.178 NAG.6: 5 residues within 4Å: Chain E: R.301 Chain F: Q.78, G.81, N.82, N.85 4 PLIP interactions: 2 interactions with chain E, 2 interactions with chain F Hydrogen bonds: E:R.301, E:R.301, F:N.85 Hydrophobic interactions: F:Q.78 NAG.7: 3 residues within 4Å: Chain I: H.26, N.46 Chain J: W.24 No protein-ligand interaction detected (PLIP) NAG.8: 2 residues within 4Å: Chain I: R.178, N.241 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:R.178 NAG.9: 5 residues within 4Å: Chain I: R.301 Chain J: Q.78, G.81, N.82, N.85 4 PLIP interactions: 2 interactions with chain J, 2 interactions with chain I Hydrophobic interactions: J:Q.78 Hydrogen bonds: J:N.85, I:R.301, I:R.301

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Turner, H.L. et al., Potent anti-influenza H7 human monoclonal antibody induces separation of hemagglutinin receptor-binding head domains. PLoS Biol. (2019)

Release Date

2019-02-20

Peptides

Hemagglutinin HA1 chain: AEI
Hemagglutinin HA2 chain: BFJ
Heavy chain Fv of H7.5 Fab: CGK
Light chain Fv of H7.5 Fab: DHL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
B

I
H

B
C

F
D

J
J

C
E

G
F

K
K

D
I

H
G

L
L

Hemagglutinin HA1 chain

Hemagglutinin HA2 chain

Heavy chain Fv of H7.5 Fab

Light chain Fv of H7.5 Fab