- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.77 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x K: POTASSIUM ION(Non-covalent)
- 6 x CQG: pyridin-4-ol(Non-covalent)
CQG.2: 2 residues within 4Å:- Chain A: Q.228, R.323
No protein-ligand interaction detected (PLIP)CQG.3: 9 residues within 4Å:- Chain A: R.100, F.123, T.124, M.379, R.381, F.448, F.449
- Chain B: Y.71
- Ligands: 0JO.4
8 PLIP interactions:7 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:F.123, A:F.448
- Hydrogen bonds: A:R.100, A:T.124, A:R.381, A:R.381, B:Y.71
- pi-Stacking: A:F.449
CQG.6: 8 residues within 4Å:- Chain A: D.68, E.75
- Chain B: E.14, T.15, V.16, S.40, K.41
- Chain C: R.9
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Water bridges: B:T.15, B:S.17
- Hydrogen bonds: A:D.68
CQG.9: 2 residues within 4Å:- Chain C: Q.228, R.323
No protein-ligand interaction detected (PLIP)CQG.10: 9 residues within 4Å:- Chain C: R.100, F.123, T.124, M.379, R.381, F.448, F.449
- Chain D: Y.71
- Ligands: 0JO.11
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:F.123, C:F.448
- Hydrogen bonds: C:R.100, C:R.381, C:R.381
- pi-Stacking: C:F.449
CQG.13: 8 residues within 4Å:- Chain A: R.9
- Chain C: D.68, E.75
- Chain D: E.14, T.15, V.16, S.40, K.41
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:E.14
- Water bridges: D:T.15, D:S.17
- 2 x 0JO: 2-{[(E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}prop-2-enoic acid(Non-covalent)
0JO.4: 19 residues within 4Å:- Chain A: T.49, S.51, Q.98, G.99, R.100, E.103, F.123, T.125, N.185, D.214, T.216, R.217, S.254, K.256, K.257, M.379, R.404
- Chain B: Y.71
- Ligands: CQG.3
21 PLIP interactions:21 interactions with chain A- Hydrogen bonds: A:T.49, A:S.51, A:Q.98, A:G.99, A:R.100, A:N.185, A:T.216, A:R.217, A:R.217, A:S.254, A:S.254, A:K.257
- Water bridges: A:R.100, A:T.126, A:K.256
- Salt bridges: A:R.100, A:R.217, A:K.257, A:K.257, A:R.404
- pi-Stacking: A:F.123
0JO.11: 19 residues within 4Å:- Chain C: T.49, S.51, Q.98, G.99, R.100, E.103, F.123, T.125, N.185, D.214, T.216, R.217, S.254, K.256, K.257, M.379, R.404
- Chain D: Y.71
- Ligands: CQG.10
19 PLIP interactions:19 interactions with chain C- Hydrogen bonds: C:S.51, C:Q.98, C:G.99, C:R.100, C:N.185, C:R.217, C:R.217, C:S.254, C:S.254, C:K.257
- Water bridges: C:R.100, C:D.214, C:K.256
- Salt bridges: C:R.100, C:R.217, C:K.257, C:K.257, C:R.404
- pi-Stacking: C:F.123
- 2 x P33: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL(Non-covalent)
P33.7: 12 residues within 4Å:- Chain B: Y.3, Y.324, Y.414, A.415, D.418
- Chain C: Y.3, A.5, Y.324, Y.414, A.415, D.418, D.422
2 PLIP interactions:2 interactions with chain B- Water bridges: B:A.5, B:Y.324
P33.14: 12 residues within 4Å:- Chain A: Y.3, A.5, Y.324, Y.414, A.415, D.418, D.422
- Chain D: Y.3, Y.324, Y.414, A.415, D.418
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:Y.324, D:D.418
- Water bridges: D:A.5, D:D.422
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Phillips, R.S. et al., Pressure and Temperature Effects on the Formation of Aminoacrylate Intermediates of Tyrosine Phenol-lyase Demonstrate Reaction Dynamics. Acs Catalysis (2020)
- Release Date
- 2019-10-02
- Peptides
- Tyrosine phenol-lyase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.77 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x K: POTASSIUM ION(Non-covalent)
- 6 x CQG: pyridin-4-ol(Non-covalent)
- 2 x 0JO: 2-{[(E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}prop-2-enoic acid(Non-covalent)
- 2 x P33: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Phillips, R.S. et al., Pressure and Temperature Effects on the Formation of Aminoacrylate Intermediates of Tyrosine Phenol-lyase Demonstrate Reaction Dynamics. Acs Catalysis (2020)
- Release Date
- 2019-10-02
- Peptides
- Tyrosine phenol-lyase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B