SMTL ID : 6mm7.3 (3 other biounits)

Catalytic subunit of cAMP-dependent protein kinase A in complex with RyR2 K2879A, S2813D phosphomimetic (2699-2904) crystal form 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

4 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 4 residues within 4Å: Chain A: H.147, K.206, W.210, G.271 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.206, A:K.206 FMT.2: 4 residues within 4Å: Chain A: K.72, Q.73, I.74, E.75 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.74, A:E.75 Water bridges: A:H.76 FMT.3: 6 residues within 4Å: Chain A: H.120, I.124, F.127, Y.135, F.303 Ligands: EDO.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.135 FMT.4: 5 residues within 4Å: Chain A: T.26, A.27, Q.31, H.51, F.97 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.31 Water bridges: A:Q.31

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.5: 13 residues within 4Å: Chain A: L.38, G.39, T.40, G.41, S.42, V.46, A.59, K.61, E.110, Y.111, V.112, T.172, D.173 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.42, A:S.42, A:K.61, A:E.110, A:V.112, A:T.172, A:D.173 Water bridges: A:T.172, A:D.173 Salt bridges: A:K.61

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 2 residues within 4Å: Chain A: S.128, E.129 Ligand excluded by PLIP

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 6 residues within 4Å: Chain A: I.124, R.126, F.127, S.128, H.131 Ligands: FMT.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.128 EDO.8: 7 residues within 4Å: Chain A: K.61, E.80, L.84, V.93, M.107, M.109, T.172 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.61, A:T.172 Water bridges: A:E.80, A:E.80 EDO.9: 6 residues within 4Å: Chain A: R.133, F.134, T.288, T.289, I.294, V.299 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.289 Water bridges: A:F.134, A:T.288, A:D.290 EDO.10: 3 residues within 4Å: Chain A: N.56, Y.58, E.96 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Haji-Ghassemi, O. et al., cAMP-dependent protein kinase A in complex with RyR2 peptide (2799-2810). Mol.Cell (2019)

Release Date

2019-05-08

Peptides

cAMP-dependent protein kinase catalytic subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

cAMP-dependent protein kinase catalytic subunit alpha

Related Entries With Identical Sequence