- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x K: POTASSIUM ION(Non-covalent)
- 6 x CQG: pyridin-4-ol(Non-covalent)
CQG.2: 2 residues within 4Å:- Chain A: Q.228, R.323
No protein-ligand interaction detected (PLIP)CQG.3: 9 residues within 4Å:- Chain A: R.100, F.123, T.124, M.379, R.381, F.448, F.449
- Chain B: Y.71
- Ligands: 0JO.4
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:F.123, A:F.448
- Hydrogen bonds: A:R.100, A:T.124, A:R.381, A:R.381
- pi-Stacking: A:F.449
CQG.6: 8 residues within 4Å:- Chain A: D.68, E.75
- Chain B: E.14, T.15, V.16, S.40, K.41
- Chain C: R.9
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:K.41
- Water bridges: B:S.17
CQG.10: 2 residues within 4Å:- Chain C: Q.228, R.323
No protein-ligand interaction detected (PLIP)CQG.11: 9 residues within 4Å:- Chain C: R.100, F.123, T.124, M.379, R.381, F.448, F.449
- Chain D: Y.71
- Ligands: 0JO.12
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:F.123, C:F.448
- Hydrogen bonds: C:R.100, C:R.381, C:R.381
- pi-Stacking: C:F.449
CQG.14: 8 residues within 4Å:- Chain A: R.9
- Chain C: D.68, E.75
- Chain D: E.14, T.15, V.16, S.40, K.41
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:K.41
- Water bridges: D:E.14, D:S.17
- 4 x 0JO: 2-{[(E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}prop-2-enoic acid(Non-covalent)
0JO.4: 18 residues within 4Å:- Chain A: T.49, S.51, Q.98, G.99, R.100, E.103, F.123, T.125, N.185, D.214, T.216, R.217, S.254, K.257, M.379, R.404
- Chain B: Y.71
- Ligands: CQG.3
22 PLIP interactions:22 interactions with chain A- Hydrogen bonds: A:T.49, A:T.49, A:S.51, A:Q.98, A:G.99, A:R.100, A:N.185, A:T.216, A:R.217, A:R.217, A:S.254, A:S.254, A:K.257
- Water bridges: A:T.126, A:K.256
- Salt bridges: A:R.100, A:R.217, A:K.256, A:K.257, A:K.257, A:R.404
- pi-Stacking: A:F.123
0JO.8: 18 residues within 4Å:- Chain A: Y.71
- Chain B: T.49, S.51, Q.98, G.99, R.100, E.103, F.123, T.125, T.126, N.185, D.214, T.216, R.217, S.254, K.256, K.257, R.404
21 PLIP interactions:20 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:T.49, B:S.51, B:Q.98, B:G.99, B:R.100, B:N.185, B:R.217, B:R.217, B:S.254, B:S.254, B:K.257
- Water bridges: B:E.103, B:K.256, A:Y.71
- Salt bridges: B:R.100, B:R.217, B:K.256, B:K.257, B:K.257, B:R.404
- pi-Stacking: B:F.123
0JO.12: 18 residues within 4Å:- Chain C: T.49, S.51, Q.98, G.99, R.100, E.103, F.123, T.125, N.185, D.214, T.216, R.217, S.254, K.257, M.379, R.404
- Chain D: Y.71
- Ligands: CQG.11
20 PLIP interactions:19 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:T.49, C:S.51, C:Q.98, C:G.99, C:R.100, C:N.185, C:R.217, C:R.217, C:S.254, C:S.254, C:K.257
- Water bridges: C:K.256, D:Y.71
- Salt bridges: C:R.100, C:R.217, C:K.256, C:K.257, C:K.257, C:R.404
- pi-Stacking: C:F.123
0JO.16: 18 residues within 4Å:- Chain C: Y.71
- Chain D: T.49, S.51, Q.98, G.99, R.100, E.103, F.123, T.125, T.126, N.185, D.214, T.216, R.217, S.254, K.256, K.257, R.404
21 PLIP interactions:21 interactions with chain D- Hydrogen bonds: D:T.49, D:S.51, D:Q.98, D:G.99, D:R.100, D:T.126, D:N.185, D:T.216, D:R.217, D:R.217, D:S.254, D:S.254, D:K.257
- Water bridges: D:K.256
- Salt bridges: D:R.100, D:R.217, D:K.256, D:K.257, D:K.257, D:R.404
- pi-Stacking: D:F.123
- 2 x P33: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL(Non-covalent)
P33.7: 13 residues within 4Å:- Chain B: Y.3, A.5, Y.324, Y.414, A.415, D.418
- Chain C: Y.3, A.5, Y.324, Y.414, A.415, D.418, D.422
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain C- Water bridges: B:A.5, B:Y.324, C:A.5
P33.15: 13 residues within 4Å:- Chain A: Y.3, A.5, Y.324, Y.414, A.415, D.418, D.422
- Chain D: Y.3, A.5, Y.324, Y.414, A.415, D.418
6 PLIP interactions:2 interactions with chain A, 4 interactions with chain D- Water bridges: A:A.5, A:D.422, D:A.5, D:Y.324, D:D.422
- Hydrogen bonds: D:D.418
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Phillips, R.S. et al., Pressure and Temperature Effects on the Formation of Aminoacrylate Intermediates of Tyrosine Phenol-lyase Demonstrate Reaction Dynamics. Acs Catalysis (2020)
- Release Date
- 2019-10-02
- Peptides
- Tyrosine phenol-lyase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x K: POTASSIUM ION(Non-covalent)
- 6 x CQG: pyridin-4-ol(Non-covalent)
- 4 x 0JO: 2-{[(E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}prop-2-enoic acid(Non-covalent)
- 2 x P33: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Phillips, R.S. et al., Pressure and Temperature Effects on the Formation of Aminoacrylate Intermediates of Tyrosine Phenol-lyase Demonstrate Reaction Dynamics. Acs Catalysis (2020)
- Release Date
- 2019-10-02
- Peptides
- Tyrosine phenol-lyase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B