SMTL ID : 6mo5.1

Co-Crystal structure of P. aeruginosa LpxC-50228 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x JWP: N-[(2S)-1-(hydroxyamino)-3-methyl-3-{[(oxetan-3-yl)methyl]sulfonyl}-1-oxobutan-2-yl]-4-(6-hydroxyhexa-1,3-diyn-1-yl)benzamide(Non-covalent)

JWP.1: 25 residues within 4Å: Chain A: L.23, H.24, M.67, E.82, H.83, T.195, F.196, G.197, F.198, M.199, D.201, I.202, L.205, R.206, A.211, G.214, S.215, V.216, A.219, V.221, H.242, K.243, D.246, H.269 Ligands: MG.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.23, A:T.195, A:F.196, A:I.202, A:L.205, A:A.211, A:A.219, A:V.221 Hydrogen bonds: A:T.195, A:F.196, A:F.198, A:D.201

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: H.83, H.242, D.246 Ligands: JWP.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.83, A:H.242, A:D.246, A:D.246

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cohen, F. et al., Optimization of LpxC Inhibitors for Antibacterial Activity and Cardiovascular Safety. Chemmedchem (2019)

Release Date

2019-07-17

Peptides

UDP-3-O-acyl-N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-3-O-acyl-N-acetylglucosamine deacetylase

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