SMTL ID : 6mod.1

Co-Crystal structure of P. aeruginosa LpxC-50432 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: H.83, H.242, D.246 Ligands: JWV.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.83, A:H.242, A:D.246, A:D.246

1 x JWV: N-[(1S)-2-(hydroxyamino)-1-(3-methoxy-1,1-dioxo-1lambda~6~-thietan-3-yl)-2-oxoethyl]-4-(6-hydroxyhexa-1,3-diyn-1-yl)benzamide(Non-covalent)

JWV.2: 20 residues within 4Å: Chain A: L.23, H.24, M.67, E.82, H.83, T.195, F.196, G.197, M.199, I.202, A.211, G.214, S.215, A.219, V.221, H.242, K.243, D.246, H.269 Ligands: MG.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.23, A:T.195, A:I.202, A:A.211, A:A.219, A:V.221 Hydrogen bonds: A:M.67, A:T.195, A:T.195, A:D.246

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: A.89, F.157, I.248, L.251, Y.252, N.256, S.257, L.258 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.256 GOL.4: 6 residues within 4Å: Chain A: T.65, T.66, G.268, H.269, A.270, L.271 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.268, A:A.270, A:L.271

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cohen, F. et al., Optimization of LpxC Inhibitors for Antibacterial Activity and Cardiovascular Safety. Chemmedchem (2019)

Release Date

2019-07-17

Peptides

UDP-3-O-acyl-N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-3-O-acyl-N-acetylglucosamine deacetylase

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