SMTL ID : 6moo.1

Co-Crystal structure of P. aeruginosa LpxC-achn975 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.84, T.196, H.243, D.247 Ligands: A5F.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.84, A:H.243, A:D.247, A:D.247

1 x A5F: N-[(2S)-3-azanyl-3-methyl-1-(oxidanylamino)-1-oxidanylidene-butan-2-yl]-4-[4-[(1R,2R)-2-(hydroxymethyl)cyclopropyl]buta -1,3-diynyl]benzamide(Non-covalent)

A5F.2: 17 residues within 4Å: Chain A: L.24, E.83, H.84, T.196, F.197, I.203, R.207, A.212, G.215, S.216, V.217, A.220, H.243, K.244, D.247, H.270 Ligands: ZN.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.24, A:T.196, A:F.197, A:I.203, A:I.203, A:A.212, A:A.220 Hydrogen bonds: A:M.68, A:T.196, A:T.196, A:V.217 Water bridges: A:K.244

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cohen, F. et al., Optimization of LpxC Inhibitors for Antibacterial Activity and Cardiovascular Safety. Chemmedchem (2019)

Release Date

2019-07-17

Peptides

UDP-3-O-acyl-N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-3-O-acyl-N-acetylglucosamine deacetylase