SMTL ID : 6mot.2 (1 other biounit)

Bacteroides intestinalis feruloyl esterase, Bacint_01033

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

homo-dimer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: A.4, G.5, T.6, G.22, E.23, D.24, R.26, H.28 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.23, A:D.24, A:H.28 EDO.2: 6 residues within 4Å: Chain A: F.67, H.68, Y.69, H.341, E.342, F.343 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:F.67, A:F.67, A:Y.69, A:F.343 Water bridges: A:F.67, A:H.68 EDO.3: 7 residues within 4Å: Chain A: E.40, I.41, S.42, F.43, R.44, G.45, I.73 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.43, A:R.44, A:G.45 EDO.4: 5 residues within 4Å: Chain A: S.321, Q.325, T.331, I.332, Y.333 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.333 EDO.5: 8 residues within 4Å: Chain B: A.4, G.5, T.6, G.22, E.23, D.24, R.26, H.28 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.23, B:D.24, B:H.28 EDO.6: 6 residues within 4Å: Chain B: F.67, H.68, Y.69, H.341, E.342, F.343 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:F.67, B:F.67, B:Y.69, B:F.343 Water bridges: B:F.67 EDO.7: 7 residues within 4Å: Chain B: E.40, I.41, S.42, F.43, R.44, G.45, I.73 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:F.43, B:R.44, B:G.45 EDO.8: 5 residues within 4Å: Chain B: S.321, Q.325, T.331, I.332, Y.333 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.333

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pereira, G.V. et al., Degradation of complex arabinoxylans by human colonic Bacteroidetes. Nat Commun (2021)

Release Date

2019-10-16

Peptides

Isoamylase N-terminal domain protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Isoamylase N-terminal domain protein

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