SMTL ID : 6mp1.1

Crystal structures of the murine class I major histocompatibility complex H-2Db in complex with the mutant TRP1-K8 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

monomer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: K.316, N.319, L.323 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.323 NAG.2: 2 residues within 4Å: Chain A: N.363, N.399 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.363

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Clancy-Thompson, E. et al., Altered Binding of Tumor Antigenic Peptides to MHC Class I Affects CD8+T Cell-Effector Responses. Cancer Immunol Res (2018)

Release Date

2018-11-07

Peptides

TRP1-K8 peptide, Beta-2-microglobulin,H-2 class I histocompatibility antigen, D-B alpha chain, chimeric construct: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

TRP1-K8 peptide, Beta-2-microglobulin,H-2 class I histocompatibility antigen, D-B alpha chain, chimeric construct