SMTL ID : 6mp3.1

Binary structure of DNA polymerase eta in complex with templating hypoxanthine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

monomer

Ligands

1 x DA- DG- DC- DG- DT- DC- DA- DT: DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3')(Non-covalent)

DA-DG-DC-DG-DT-DC-DA-DT.1: 29 residues within 4Å: Chain A: D.16, S.116, D.118, E.119, K.227, I.258, R.259, S.260, L.261, G.262, G.263, K.264, L.265, Q.368, R.380, L.381, L.384, R.385, R.386, C.387 Chain B: I.4, A.5, T.6, G.7, A.8, C.9, G.10, C.11, T.12 32 PLIP interactions: 32 interactions with chain A Hydrogen bonds: A:Y.42, A:K.320, A:T.321, A:T.321, A:G.323, A:S.325, A:N.327, A:R.354 Water bridges: A:Q.41, A:R.96, A:R.114, A:R.114, A:R.114, A:N.297, A:R.316, A:K.320, A:K.320, A:S.325, A:S.325, A:K.326, A:R.354, A:R.354, A:R.374 Salt bridges: A:K.89, A:R.96, A:R.96, A:K.296, A:K.314, A:R.316, A:K.320, A:K.326, A:R.354

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain A: D.179, S.180, L.181 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.180 NA.3: 3 residues within 4Å: Chain A: Q.182, S.188, D.190 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.182, A:S.188, A:D.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hawkins, M.A. et al., Structural Analysis of Translesion Synthesis Across Hypoxanthine Lesion Using Human DNA Polymerase Eta. To Be Published

Release Date

2019-10-16

Peptides

DNA polymerase eta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA polymerase eta

Related Entries With Identical Sequence