SMTL ID : 6mq0.1

B. pseudomallei KatG crystallized in the presence of furoyl hydrazide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 26 residues within 4Å: Chain A: G.84, L.85, I.87, R.88, W.91, V.219, P.221, F.241, L.254, I.255, G.258, H.259, F.261, G.262, K.263, T.264, H.265, T.303, S.304, L.306, W.310, L.366, T.368, F.396, W.400 Ligands: OXY.4 30 PLIP interactions: 29 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:I.87, A:R.88, A:W.91, A:W.91, A:P.221, A:P.221, A:F.241, A:L.254, A:I.255, A:T.264, A:L.306, A:W.310, A:L.366, A:F.396, A:W.400 Hydrogen bonds: A:K.263, A:H.265, A:S.304 Water bridges: A:D.78, A:D.78, A:G.84, A:R.88, A:R.88, A:H.265 Salt bridges: A:R.88, A:H.265, A:H.265 pi-Stacking: A:W.91 Metal complexes: A:H.259, H2O.3 HEM.8: 26 residues within 4Å: Chain B: G.84, L.85, I.87, R.88, W.91, V.219, P.221, F.241, L.254, I.255, G.258, H.259, F.261, G.262, K.263, T.264, H.265, T.303, S.304, L.306, W.310, L.366, T.368, F.396, W.400 Ligands: OXY.10 30 PLIP interactions: 29 interactions with chain B, 1 Ligand-Water interactions Hydrophobic interactions: B:I.87, B:R.88, B:W.91, B:W.91, B:P.221, B:F.241, B:L.254, B:I.255, B:I.255, B:T.264, B:L.306, B:W.310, B:W.310, B:L.366, B:F.396, B:W.400 Hydrogen bonds: B:K.263, B:H.265, B:T.303, B:S.304 Water bridges: B:G.84, B:R.88, B:R.88, B:H.265 Salt bridges: B:R.88, B:H.265, B:H.265 pi-Stacking: B:W.91 Metal complexes: B:H.259, H2O.41

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain A: G.102, R.103, G.104, D.407, S.474 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.104, A:D.407 Water bridges: A:E.108 NA.9: 4 residues within 4Å: Chain B: G.102, R.103, G.104, S.474 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.474

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: M.42, G.43 Chain B: K.707 Ligand excluded by PLIP

2 x OXY: OXYGEN MOLECULE(Non-covalent)

OXY.4: 4 residues within 4Å: Chain A: R.88, H.92, D.121 Ligands: HEM.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.88, A:D.121 Water bridges: A:W.91, A:H.92 OXY.10: 4 residues within 4Å: Chain B: R.88, H.92, D.121 Ligands: HEM.8 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.88, B:R.88, B:D.121 Water bridges: B:D.121

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.5: 3 residues within 4Å: Chain A: K.360, H.361, R.362 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.362 Salt bridges: A:H.361, A:R.362

3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.6: 2 residues within 4Å: Chain A: T.303, S.304 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.303 MPD.7: 3 residues within 4Å: Chain A: D.63, P.134, I.135 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.134 Water bridges: A:K.138 MPD.11: 5 residues within 4Å: Chain B: P.120, V.273, W.289, T.303, S.304 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:V.273 Hydrogen bonds: B:P.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Loewen, P.C., B. pseudomallei KatG crystallized in the presence of furoyl hydrazide. To be published

Release Date

2018-10-17

Peptides

Catalase-peroxidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Catalase-peroxidase

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