SMTL ID : 6mqa.1

Structure of HIV-1 CA P207S

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-hexamer

Ligands

18 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 3 residues within 4Å: Chain A: M.145 Chain F: R.163, Q.220 Ligand excluded by PLIP IOD.2: 3 residues within 4Å: Chain A: G.62 Chain F: K.171, R.174 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: G.157, P.158 Ligand excluded by PLIP IOD.6: 3 residues within 4Å: Chain B: M.145 Chain D: R.163, Q.220 Ligand excluded by PLIP IOD.7: 3 residues within 4Å: Chain B: G.62 Chain D: K.171, R.174 Ligand excluded by PLIP IOD.8: 2 residues within 4Å: Chain B: G.157, P.158 Ligand excluded by PLIP IOD.11: 3 residues within 4Å: Chain C: M.145 Chain E: R.163, Q.220 Ligand excluded by PLIP IOD.12: 3 residues within 4Å: Chain C: G.62 Chain E: K.171, R.174 Ligand excluded by PLIP IOD.13: 2 residues within 4Å: Chain C: G.157, P.158 Ligand excluded by PLIP IOD.16: 3 residues within 4Å: Chain C: R.163, Q.220 Chain D: M.145 Ligand excluded by PLIP IOD.17: 3 residues within 4Å: Chain C: K.171, R.174 Chain D: G.62 Ligand excluded by PLIP IOD.18: 2 residues within 4Å: Chain D: G.157, P.158 Ligand excluded by PLIP IOD.21: 3 residues within 4Å: Chain A: R.163, Q.220 Chain E: M.145 Ligand excluded by PLIP IOD.22: 3 residues within 4Å: Chain A: K.171, R.174 Chain E: G.62 Ligand excluded by PLIP IOD.23: 2 residues within 4Å: Chain E: G.157, P.158 Ligand excluded by PLIP IOD.26: 3 residues within 4Å: Chain B: R.163, Q.220 Chain F: M.145 Ligand excluded by PLIP IOD.27: 3 residues within 4Å: Chain B: K.171, R.174 Chain F: G.62 Ligand excluded by PLIP IOD.28: 2 residues within 4Å: Chain F: G.157, P.158 Ligand excluded by PLIP

12 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 1 residues within 4Å: Chain A: I.38 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: R.174, K.183 Ligand excluded by PLIP CL.9: 1 residues within 4Å: Chain B: I.38 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain B: R.174, K.183 Ligand excluded by PLIP CL.14: 1 residues within 4Å: Chain C: I.38 Ligand excluded by PLIP CL.15: 2 residues within 4Å: Chain C: R.174, K.183 Ligand excluded by PLIP CL.19: 1 residues within 4Å: Chain D: I.38 Ligand excluded by PLIP CL.20: 2 residues within 4Å: Chain D: R.174, K.183 Ligand excluded by PLIP CL.24: 1 residues within 4Å: Chain E: I.38 Ligand excluded by PLIP CL.25: 2 residues within 4Å: Chain E: R.174, K.183 Ligand excluded by PLIP CL.29: 1 residues within 4Å: Chain F: I.38 Ligand excluded by PLIP CL.30: 2 residues within 4Å: Chain F: R.174, K.183 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smaga, S.S. et al., MxB Restricts HIV-1 by Targeting the Tri-hexamer Interface of the Viral Capsid. Structure (2019)

Release Date

2019-06-19

Peptides

Capsid protein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Capsid protein