SMTL ID : 6mqc.2 (1 other biounit)

Vaccine-elicited NHP FP-targeting neutralizing antibody 0PV-c.01 in complex with FP (residue 512-519)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ALA- VAL- GLY- ILE- GLY- ALA- VAL- PHE: HIV fusion peptide residue 512-519(Non-covalent)

ALA-VAL-GLY-ILE-GLY-ALA-VAL-PHE.1: 18 residues within 4Å: Chain A: R.31, G.32, F.33, L.34, Y.35, R.101, A.102, K.103, D.104, Y.105, R.106, R.112 Chain B: D.31, C.37, F.96, E.98, F.99, L.101 20 PLIP interactions: 14 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:R.31, A:R.31, A:L.34, A:Y.105, B:F.96, B:F.99, B:L.101 Hydrogen bonds: A:R.31, A:R.31, A:F.33, A:F.33, A:Y.35, A:R.101, A:K.103, A:K.103, A:Y.105, A:R.106, B:D.31, B:D.31, B:F.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kong, R. et al., Antibody Lineages with Vaccine-Induced Antigen-Binding Hotspots Develop Broad HIV Neutralization. Cell (2019)

Release Date

2019-07-31

Peptides

0PV-C.01 antibody Fab heavy chain: A
0PV-C.01 antibody Fab light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

0PV-C.01 antibody Fab heavy chain

0PV-C.01 antibody Fab light chain

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