SMTL ID : 6mql.2 (1 other biounit)

Crystal Structure of GTPase Domain of Human Septin 12 Mutant T89M

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.17 Å

Oligo State

homo-dimer

Ligands

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 18 residues within 4Å: Chain A: Q.32, S.33, G.34, L.35, G.36, K.37, S.38, T.39, R.170, D.172, V.225, G.226, R.241 Chain B: T.143, H.145, S.173, E.178 Ligands: MG.2 22 PLIP interactions: 4 interactions with chain B, 18 interactions with chain A Hydrogen bonds: B:S.173, A:G.34, A:L.35, A:G.36, A:K.37, A:S.38, A:T.39, A:T.39, A:R.170, A:G.226, A:R.241 Water bridges: B:H.145, A:K.37, A:S.38, A:S.38, A:D.87, A:R.170 Salt bridges: B:H.145, B:H.145, A:K.37, A:D.172 pi-Cation interactions: A:R.241 GDP.3: 18 residues within 4Å: Chain A: T.143, H.145, S.173, E.178 Chain B: Q.32, S.33, G.34, L.35, G.36, K.37, S.38, T.39, R.170, D.172, V.225, G.226, R.241 Ligands: MG.4 22 PLIP interactions: 18 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:G.34, B:L.35, B:G.36, B:K.37, B:S.38, B:T.39, B:T.39, B:R.170, B:G.226, B:R.241, A:S.173 Water bridges: B:K.37, B:S.38, B:S.38, B:D.87, B:R.170, A:H.145 Salt bridges: B:K.37, B:D.172, A:H.145, A:H.145 pi-Cation interactions: B:R.241

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: S.38, D.87 Ligands: GDP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:S.38, H2O.1, H2O.1, H2O.1, H2O.2 MG.4: 3 residues within 4Å: Chain B: S.38, D.87 Ligands: GDP.3 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:S.38, H2O.2, H2O.3, H2O.3, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Castro, D.K.S.V. et al., Crystal Structure of GTPase Domain of Human Septin 12. To Be Published

Release Date

2019-11-20

Peptides

Septin-12: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Septin-12

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