SMTL ID : 6mqm.4 (3 other biounits)

Vaccine-elicited NHP FP-targeting neutralizing antibody DF1W-a.01 in complex with HIV fusion peptide (residue 512-519)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.48 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ALA- VAL- GLY- ILE- GLY- ALA- VAL: HIV Env fusion peptide residue 512-519(Non-covalent)

ALA-VAL-GLY-ILE-GLY-ALA-VAL.1: 13 residues within 4Å: Chain A: K.32, A.33, W.34, Y.51, E.100, G.101, P.102, D.104 Chain B: H.31, Y.37, G.96, V.97, R.101 10 PLIP interactions: 5 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:W.34, A:W.34, B:Y.37, B:Y.37, B:V.97 Hydrogen bonds: A:G.101, A:D.104, A:D.104, B:R.101, B:R.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kong, R. et al., Antibody Lineages with Vaccine-Induced Antigen-Binding Hotspots Develop Broad HIV Neutralization. Cell (2019)

Release Date

2019-07-31

Peptides

antibody Fab heavy chain: A
antibody Fab light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
J

B
K

antibody Fab heavy chain

antibody Fab light chain

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