- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-tetramer
- Ligands
- 6 x CQG: pyridin-4-ol(Non-covalent)
- 4 x K: POTASSIUM ION(Non-covalent)
K.2: 3 residues within 4Å:- Chain A: E.68
- Chain B: G.51, N.261
5 PLIP interactions:1 interactions with chain A, 1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: A:E.68, B:G.51, H2O.2, H2O.3, H2O.9
K.4: 3 residues within 4Å:- Chain A: G.51, N.261
- Chain B: E.68
5 PLIP interactions:1 interactions with chain B, 1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: B:E.68, A:G.51, H2O.3, H2O.3, H2O.8
K.10: 3 residues within 4Å:- Chain C: E.68
- Chain D: G.51, N.261
5 PLIP interactions:1 interactions with chain D, 1 interactions with chain C, 3 Ligand-Water interactions- Metal complexes: D:G.51, C:E.68, H2O.16, H2O.16, H2O.23
K.12: 3 residues within 4Å:- Chain C: G.51, N.261
- Chain D: E.68
5 PLIP interactions:1 interactions with chain D, 1 interactions with chain C, 3 Ligand-Water interactions- Metal complexes: D:E.68, C:G.51, H2O.16, H2O.17, H2O.21
- 4 x 0JO: 2-{[(E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}prop-2-enoic acid(Non-covalent)
0JO.3: 20 residues within 4Å:- Chain A: T.48, S.50, Q.97, G.98, R.99, E.102, F.122, T.124, T.125, N.184, D.213, T.215, R.216, S.253, K.255, K.256, M.378, R.403
- Chain B: Y.70
- Ligands: CQG.1
21 PLIP interactions:21 interactions with chain A- Hydrophobic interactions: A:F.122
- Hydrogen bonds: A:T.48, A:S.50, A:Q.97, A:G.98, A:R.99, A:T.125, A:N.184, A:R.216, A:R.216, A:S.253, A:S.253, A:K.256
- Water bridges: A:K.255
- Salt bridges: A:R.99, A:R.216, A:K.255, A:K.256, A:K.256, A:R.403
- pi-Stacking: A:F.122
0JO.8: 17 residues within 4Å:- Chain A: Y.70
- Chain B: T.48, S.50, Q.97, G.98, R.99, E.102, F.122, T.124, N.184, D.213, T.215, R.216, S.253, K.255, K.256, R.403
18 PLIP interactions:17 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:S.50, B:Q.97, B:G.98, B:R.99, B:N.184, B:R.216, B:R.216, B:S.253, B:S.253, B:K.256
- Water bridges: B:E.102, A:Y.70
- Salt bridges: B:R.99, B:R.216, B:K.255, B:K.256, B:R.403
- pi-Stacking: B:F.122
0JO.11: 20 residues within 4Å:- Chain C: T.48, S.50, Q.97, G.98, R.99, E.102, F.122, T.124, T.125, N.184, D.213, T.215, R.216, S.253, K.255, K.256, M.378, R.403
- Chain D: Y.70
- Ligands: CQG.9
21 PLIP interactions:20 interactions with chain C, 1 interactions with chain D- Hydrophobic interactions: C:F.122
- Hydrogen bonds: C:T.48, C:S.50, C:Q.97, C:G.98, C:R.99, C:N.184, C:R.216, C:R.216, C:S.253, C:S.253, C:K.256
- Water bridges: C:K.255, D:Y.70
- Salt bridges: C:R.99, C:R.216, C:K.255, C:K.256, C:K.256, C:R.403
- pi-Stacking: C:F.122
0JO.16: 17 residues within 4Å:- Chain C: Y.70
- Chain D: T.48, S.50, Q.97, G.98, R.99, E.102, F.122, T.124, N.184, D.213, T.215, R.216, S.253, K.255, K.256, R.403
18 PLIP interactions:18 interactions with chain D- Hydrogen bonds: D:T.48, D:S.50, D:Q.97, D:G.98, D:R.99, D:T.125, D:N.184, D:R.216, D:R.216, D:S.253, D:S.253, D:K.256
- Salt bridges: D:R.99, D:R.216, D:K.255, D:K.256, D:R.403
- pi-Stacking: D:F.122
- 2 x P33: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL(Non-covalent)
P33.5: 12 residues within 4Å:- Chain B: Y.2, Y.323, Y.413, A.414, D.417, V.418, D.421
- Chain C: Y.2, Y.323, Y.413, D.417, D.421
No protein-ligand interaction detected (PLIP)P33.13: 12 residues within 4Å:- Chain A: Y.2, Y.323, Y.413, D.417, D.421
- Chain D: Y.2, Y.323, Y.413, A.414, D.417, V.418, D.421
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain D- Hydrogen bonds: A:Y.323, A:D.421, D:Y.323, D:D.417
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Phillips, R.S. et al., Pressure and Temperature Effects on the Formation of Aminoacrylate Intermediates of Tyrosine Phenol-lyase Demonstrate Reaction Dynamics. Acs Catalysis (2020)
- Release Date
- 2019-10-16
- Peptides
- Tyrosine phenol-lyase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-tetramer
- Ligands
- 6 x CQG: pyridin-4-ol(Non-covalent)
- 4 x K: POTASSIUM ION(Non-covalent)
- 4 x 0JO: 2-{[(E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}prop-2-enoic acid(Non-covalent)
- 2 x P33: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Phillips, R.S. et al., Pressure and Temperature Effects on the Formation of Aminoacrylate Intermediates of Tyrosine Phenol-lyase Demonstrate Reaction Dynamics. Acs Catalysis (2020)
- Release Date
- 2019-10-16
- Peptides
- Tyrosine phenol-lyase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B