SMTL ID : 6mrl.1 (3 other biounits)

Cucumber Leaf Spot Virus

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-trimer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.146, Q.260 Chain C: D.174, D.176, D.179 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain A Metal complexes: C:D.174, C:D.174, C:D.179, A:D.146 CA.2: 5 residues within 4Å: Chain A: D.174, D.176, D.179 Chain B: D.146, Q.260 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Metal complexes: B:D.146, A:D.174, A:D.174, A:D.179 CA.3: 5 residues within 4Å: Chain B: D.176, D.179 Chain C: D.146, D.218, Q.260 5 PLIP interactions: 2 interactions with chain C, 3 interactions with chain B Metal complexes: C:D.146, C:D.218, B:D.176, B:D.179, B:D.179

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sherman, M.B. et al., Near-Atomic-Resolution Cryo-Electron Microscopy Structures of Cucumber Leaf Spot Virus and Red Clover Necrotic Mosaic Virus: Evolutionary Divergence at the Icosahedral Three-Fold Axes. J.Virol. (2020)

Release Date

2019-10-16

Peptides

p41: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

p41

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