SMTL ID : 6mrm.1 (3 other biounits)

Red Clover Necrotic Mosaic Virus

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-trimer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.127, D.130 Chain B: D.97, D.169, Q.211 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Metal complexes: A:D.127, A:D.130, A:D.130, B:D.97, B:D.97 CA.2: 5 residues within 4Å: Chain A: D.97, D.169, Q.211 Chain C: D.127, D.130 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain C Metal complexes: A:D.97, A:D.169, C:D.127, C:D.130, C:D.130 CA.3: 4 residues within 4Å: Chain B: D.127, D.130 Chain C: D.97, Q.211 4 PLIP interactions: 1 interactions with chain C, 3 interactions with chain B Metal complexes: C:D.97, B:D.127, B:D.130, B:D.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sherman, M.B. et al., Near-Atomic-Resolution Cryo-Electron Microscopy Structures of Cucumber Leaf Spot Virus and Red Clover Necrotic Mosaic Virus: Evolutionary Divergence at the Icosahedral Three-Fold Axes. J.Virol. (2020)

Release Date

2019-10-16

Peptides

Capsid protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Capsid protein

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