SMTL ID : 6mro.1

Crystal structure of methyl transferase from Methanosarcina acetivorans at 1.6 Angstroms resolution, Northeast Structural Genomics Consortium (NESG) Target MvR53.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 16 residues within 4Å: Chain A: W.3, Y.7, W.13, G.40, C.41, G.42, N.46, D.61, L.62, G.86, N.87, V.88, S.106, G.107, L.108, V.111 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:Y.7, A:G.42, A:N.46, A:L.62, A:N.87, A:V.88, A:S.106 Water bridges: A:Y.7, A:Y.7, A:I.15, A:G.44, A:E.45, A:S.106, A:S.106, A:S.106, A:S.106

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: D.141, E.143, G.145, E.146, E.148 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.141, A:E.143, A:G.145, A:E.148, H2O.4 CA.3: 5 residues within 4Å: Chain A: D.141, E.146, E.148, R.152, E.157 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.141, A:E.146, A:E.146, A:E.157, H2O.2

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 2 residues within 4Å: Chain A: H.125, K.194 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: P.18, Q.23 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: L.62, N.87, E.90 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: H.17, D.177, S.178 Ligand excluded by PLIP CL.8: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.9: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain A: E.146, Y.147 Ligand excluded by PLIP CL.11: 1 residues within 4Å: Chain A: T.96 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, S. et al., Crystal structure of a methyl transferase from Methanosarcina acetivorans at 1.6 Angstroms resolution. To Be Published

Release Date

2018-10-24

Peptides

methyl transferase from Methanosarcina acetivorans: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

methyl transferase from Methanosarcina acetivorans