SMTL ID : 6mrv.1

Sialidase26 co-crystallized with DANA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x DAN: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID(Non-covalent)

DAN.1: 17 residues within 4Å: Chain A: R.203, I.204, R.222, D.228, L.229, D.271, A.298, W.299, F.343, L.345, T.397, E.398, R.414, N.416, R.478, W.507, Y.509 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:I.204, A:F.343 Hydrogen bonds: A:R.222, A:D.228, A:D.271, A:D.271, A:T.397, A:T.397, A:R.414, A:R.414 Water bridges: A:D.271, A:W.299, A:R.414, A:N.416, A:N.416 Salt bridges: A:R.203, A:R.414, A:R.478 DAN.2: 17 residues within 4Å: Chain B: R.203, I.204, R.222, D.228, L.229, D.271, A.298, W.299, F.343, L.345, T.397, E.398, R.414, N.416, R.478, W.507, Y.509 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:I.204, B:F.343, B:L.345 Hydrogen bonds: B:R.222, B:D.228, B:D.271, B:D.271, B:T.397, B:T.397, B:R.414, B:R.414 Water bridges: B:D.271, B:D.271, B:W.299, B:R.414, B:N.416, B:N.416 Salt bridges: B:R.203, B:R.414, B:R.478

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zaramela, L.S. et al., Gut bacteria responding to dietary change encode sialidases that exhibit preference for red meat-associated carbohydrates. Nat Microbiol (2019)

Release Date

2019-10-02

Peptides

Sialidase26: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Sialidase26

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