SMTL ID : 6ms4.1

Crystal structure of the DENR-MCT-1 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

3 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.1: 5 residues within 4Å: Chain A: A.101, N.110, I.111, M.112, G.115 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.110, A:M.112 PGE.2: 4 residues within 4Å: Chain A: H.94, Q.96, Y.124, M.135 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.94, A:Y.124, A:Y.124 PGE.6: 4 residues within 4Å: Chain B: R.6, V.7, L.8, Y.9 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.6, B:R.6, B:Y.9, B:Y.9

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 1 residues within 4Å: Chain A: K.103 No protein-ligand interaction detected (PLIP) GOL.7: 4 residues within 4Å: Chain A: K.103, L.106 Chain B: Y.22, P.24 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.103, A:K.103

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 2 residues within 4Å: Chain A: H.58, R.74 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.58

1 x ZN: ZINC ION(Non-covalent)

ZN.5: 5 residues within 4Å: Chain B: C.10, V.12, C.13, C.20, C.29 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.10, B:C.13, B:C.20, B:C.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lomakin, I.B. et al., Crystal structure of the DENR-MCT-1 complex revealed zinc-binding site essential for heterodimer formation. Proc. Natl. Acad. Sci. U.S.A. (2019)

Release Date

2019-01-02

Peptides

Malignant T-cell-amplified sequence 1: A
Density-regulated protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Malignant T-cell-amplified sequence 1

Density-regulated protein

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