SMTL ID : 6ms7.1

Peroxisome proliferator-activated receptor gamma ligand binding domain in complex with a novel selective PPAR-gamma modulator VSP-77

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.43 Å

Oligo State

hetero-1-1-mer

Ligands

2 x V77: {[(1S)-1-(4-chlorophenyl)octyl]oxy}acetic acid(Non-covalent)

V77.1: 12 residues within 4Å: Chain A: F.23, R.85, A.89, E.92, I.123, Y.124, M.126, L.130, I.138, S.139, H.246 Ligands: V77.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:R.85, A:A.89, A:I.123, A:Y.124, A:M.126 Hydrogen bonds: A:S.139 Water bridges: A:E.140 Salt bridges: A:R.85 V77.2: 18 residues within 4Å: Chain A: I.78, F.79, C.82, Q.83, S.86, H.120, L.150, L.153, F.157, F.160, M.161, H.246, L.250, S.261, L.262, L.266, Y.270 Ligands: V77.1 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.78, A:F.79, A:Q.83, A:L.150, A:L.153, A:F.157, A:F.160, A:L.250, A:L.262 Hydrogen bonds: A:S.86, A:Y.270 Salt bridges: A:H.120, A:H.246 pi-Stacking: A:F.79 Halogen bonds: A:S.261

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, H. et al., Identification and structural insight of an effective PPAR gamma modulator with improved therapeutic index for anti-diabetic drug discovery. Chem Sci (2020)

Release Date

2019-10-23

Peptides

Peroxisome proliferator-activated receptor gamma: A
PGC1 LXXLL motif: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

PGC1 LXXLL motif