SMTL ID : 6mso.2 (1 other biounit)

Crystal structure of mitochondrial fumarate hydratase from Leishmania major in a complex with inhibitor thiomalate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 11 residues within 4Å: Chain A: C.150, Q.151, G.231, S.234, A.268, C.269, C.364, A.366, K.510, G.534 Ligands: JYD.4 4 PLIP interactions: 4 interactions with chain A, Salt bridges: A:D.152 Metal complexes: A:C.150, A:C.269, A:C.364 SF4.7: 13 residues within 4Å: Chain B: C.150, Q.151, G.231, S.234, A.268, C.269, C.364, S.365, A.366, R.368, K.510, G.534 Ligands: JYD.8 4 PLIP interactions: 4 interactions with chain B, Salt bridges: B:D.152 Metal complexes: B:C.150, B:C.269, B:C.364

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: K.251, S.252, N.255 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.251, A:K.251, A:N.255 Water bridges: A:S.252

4 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.3: 3 residues within 4Å: Chain A: R.116, Q.390, Y.391 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.390 1PE.5: 6 residues within 4Å: Chain A: E.123, E.320, L.323, K.324, Q.327, K.338 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.123, A:E.123, A:K.324, A:Q.327, A:K.338 1PE.6: 6 residues within 4Å: Chain A: S.114, K.117, Y.339, H.342, D.343, R.345 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.343, A:R.345, A:R.345 Water bridges: A:V.344 1PE.9: 3 residues within 4Å: Chain B: L.66, K.69, D.377 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.69, B:D.377, B:D.377

2 x JYD: (2S)-2-sulfanylbutanedioic acid(Non-covalent)

JYD.4: 11 residues within 4Å: Chain A: Q.151, D.152, R.190, G.232, G.233, R.440, T.486, T.487, R.490, K.510 Ligands: SF4.1 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.151, A:G.233, A:T.487, A:T.487 Water bridges: A:G.470 Salt bridges: A:R.190, A:R.440, A:R.490, A:K.510 JYD.8: 12 residues within 4Å: Chain A: H.352 Chain B: Q.151, D.152, R.190, G.232, G.233, R.440, T.486, T.487, R.490, K.510 Ligands: SF4.7 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:D.152 Hydrogen bonds: B:Q.151, B:G.233, B:T.487 Salt bridges: B:R.190, B:R.440, B:R.490, B:K.510

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feliciano, P.R. et al., Crystal Structures of Fumarate Hydratases from Leishmania major in a Complex with Inhibitor 2-Thiomalate. ACS Chem. Biol. (2019)

Release Date

2019-01-30

Peptides

fumarate hydratase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

fumarate hydratase

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