SMTL ID : 6msw.2 (2 other biounits)

Crystal structure of BH1352 2-deoxyribose-5-phosphate from Bacillus halodurans, K184L mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.17 Å

Oligo State

homo-dimer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: Y.105, E.144 No protein-ligand interaction detected (PLIP) GOL.2: 4 residues within 4Å: Chain A: Q.113, E.120, K.148, A.149 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.113, A:K.148 GOL.3: 2 residues within 4Å: Chain A: E.28, E.32 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.28, A:E.28 GOL.4: 1 residues within 4Å: Chain B: E.32 No protein-ligand interaction detected (PLIP) GOL.5: 1 residues within 4Å: Chain B: G.87 1 PLIP interactions: 1 interactions with chain B Water bridges: B:A.49 GOL.6: 2 residues within 4Å: Chain B: D.191, D.194 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, T. et al., Rational engineering of 2-deoxyribose-5-phosphate aldolases for the biosynthesis of (R)-1,3-butanediol. J.Biol.Chem. (2020)

Release Date

2019-10-23

Peptides

Deoxyribose-phosphate aldolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

Deoxyribose-phosphate aldolase

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