SMTL ID : 6mtu.2 (1 other biounit)

Crystal structure of human Scribble PDZ1:pMCC complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.14 Å

Oligo State

monomer

Ligands

1 x PRO- HIS- THR- ASN- GLU- THR- SEP- LEU: Colorectal mutant cancer protein(Non-covalent)

PRO-HIS-THR-ASN-GLU-THR-SEP-LEU.1: 20 residues within 4Å: Chain A: G.39, L.40, G.41, I.42, S.43, I.44, A.45, G.46, G.49, S.50, T.51, P.52, S.63, R.64, H.95, V.99, L.102, R.103 Ligands: PO4.2, EDO.3 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:I.44, A:H.95, A:V.99, A:L.102, A:R.103 Hydrogen bonds: A:L.40, A:G.41, A:I.42, A:I.42, A:I.42, A:I.44, A:I.44, A:G.46, A:G.49, A:S.50, A:S.50, A:T.51, A:T.51, A:T.51, A:S.63, A:H.95 Water bridges: A:T.51 Salt bridges: A:R.64

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 6 residues within 4Å: Chain A: S.50, E.94, H.95, H.96 Ligands: PRO-HIS-THR-ASN-GLU-THR-SEP-LEU.1, PRO-HIS-THR-ASN-GLU-THR-SEP-LEU.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.95, A:H.96 Salt bridges: A:H.96

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: G.39, G.41, R.64, S.66 Ligands: PRO-HIS-THR-ASN-GLU-THR-SEP-LEU.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.41, A:R.64, A:S.66 EDO.4: 4 residues within 4Å: Chain A: E.27, L.29, R.77, R.115 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.27, A:R.77, A:R.115

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 4 residues within 4Å: Chain A: Y.53, K.54, V.78, G.79 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.53 PEG.6: 3 residues within 4Å: Chain A: H.96, E.97, E.100 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Caria, S. et al., Structural analysis of phosphorylation-associated interactions of human MCC with Scribble PDZ domains. Febs J. (2019)

Release Date

2019-08-14

Peptides

Protein scribble homolog: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Protein scribble homolog

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