SMTL ID : 6mu0.2 (1 other biounit)

Crystal Structure of Ribose-5-phosphate Isomerase B from Mycoplasma genitalium with bound Ribulose-5-phosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

homo-dimer

Ligands

2 x 5RP: RIBULOSE-5-PHOSPHATE(Non-covalent)

5RP.1: 13 residues within 4Å: Chain A: D.18, H.19, T.20, Y.53, C.77, G.78, T.79, G.82, R.121 Chain B: H.110, D.111, R.144, R.148 23 PLIP interactions: 14 interactions with chain A, 9 interactions with chain B Hydrogen bonds: A:D.18, A:T.20, A:G.78, A:T.79, A:V.81, A:G.82, B:D.111 Water bridges: A:H.19, A:T.79, A:R.121, A:R.121, A:R.121, A:R.121, B:H.110, B:R.144, B:R.148, B:R.148, B:R.148 Salt bridges: A:H.19, A:R.121, B:H.110, B:R.144, B:R.148 5RP.2: 13 residues within 4Å: Chain A: H.110, D.111, R.144, R.148 Chain B: D.18, H.19, T.20, Y.53, C.77, G.78, T.79, G.82, R.121 23 PLIP interactions: 9 interactions with chain A, 14 interactions with chain B Hydrogen bonds: A:H.110, A:D.111, B:D.18, B:G.78, B:T.79, B:V.81, B:G.82 Water bridges: A:R.144, A:H.145, A:R.148, A:R.148, B:H.19, B:T.79, B:T.79, B:R.121, B:R.121, B:R.121, B:R.121 Salt bridges: A:H.110, A:R.144, A:R.148, B:H.19, B:R.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dranow, D.M. et al., Crystal Structure of Ribose-5-phosphate Isomerase B from Mycoplasma genitalium with bound Ribulose-5-phosphate. to be published

Release Date

2018-11-14

Peptides

Probable ribose-5-phosphate isomerase B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Probable ribose-5-phosphate isomerase B

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