SMTL ID : 6mvf.2 (1 other biounit)

Crystal structure of FMN-binding beta-glucuronidase from Facaelibacterium prausnitzii L2-6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-trimer

Ligands

3 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 8 residues within 4Å: Chain A: D.174, Y.177, G.182, M.184, F.202, K.379, Y.386, L.423 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.386, A:L.423 Hydrogen bonds: A:D.174, A:Y.177, A:Y.177 Water bridges: A:Y.177 Salt bridges: A:K.379 pi-Stacking: A:Y.177, A:Y.177, A:F.202, A:F.202 FMN.2: 8 residues within 4Å: Chain B: D.174, Y.177, G.182, M.184, F.202, K.379, Y.386, L.423 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:Y.386, B:L.423 Hydrogen bonds: B:D.174, B:D.174 Water bridges: B:Y.177, B:Y.178, B:Y.178 Salt bridges: B:K.379 pi-Stacking: B:Y.177, B:F.202, B:F.202 FMN.3: 8 residues within 4Å: Chain C: D.174, Y.177, M.184, F.202, K.379, I.383, Y.386, L.423 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:M.184, C:I.383, C:Y.386 Hydrogen bonds: C:D.174, C:D.174, C:Y.177 Water bridges: C:Y.177 Salt bridges: C:K.379 pi-Stacking: C:Y.177, C:F.202, C:F.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pellock, S.J. et al., Discovery and Characterization of FMN-Binding beta-Glucuronidases in the Human Gut Microbiome. J. Mol. Biol. (2019)

Release Date

2019-01-30

Peptides

Beta-galactosidase/beta-glucuronidase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

C
E

Beta-galactosidase/beta-glucuronidase

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