- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.33 Å
- Oligo State
- homo-tetramer
- Ligands
- 16 x PX4: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
- 4 x ACT: ACETATE ION(Non-functional Binders)
ACT.5: 4 residues within 4Å:- Chain A: S.196
- Chain C: M.199
- Ligands: ACT.23, ACT.32
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:S.196
ACT.14: 4 residues within 4Å:- Chain B: S.196
- Chain D: M.199
- Ligands: ACT.23, ACT.32
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:S.196
ACT.23: 4 residues within 4Å:- Chain B: M.199
- Chain C: S.196
- Ligands: ACT.5, ACT.14
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:S.196
ACT.32: 4 residues within 4Å:- Chain A: M.199
- Chain D: S.196
- Ligands: ACT.5, ACT.14
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:S.196
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.6: 5 residues within 4Å:- Chain A: R.173, F.174, P.175, E.176, W.177
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:F.174, A:E.176, A:W.177
SO4.15: 5 residues within 4Å:- Chain B: R.173, F.174, P.175, E.176, W.177
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:F.174, B:E.176, B:W.177
SO4.24: 5 residues within 4Å:- Chain C: R.173, F.174, P.175, E.176, W.177
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:F.174, C:E.176, C:W.177
SO4.33: 5 residues within 4Å:- Chain D: R.173, F.174, P.175, E.176, W.177
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:F.174, D:E.176, D:W.177
- 12 x CPS: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE(Non-covalent)
CPS.7: 12 residues within 4Å:- Chain A: A.140, S.143, V.144, I.234, A.238, I.241
- Chain C: V.232, A.233, V.236, D.237
- Ligands: CPS.8, CPS.26
6 PLIP interactions:2 interactions with chain C, 4 interactions with chain A- Hydrophobic interactions: C:A.233, C:V.236, A:V.144, A:I.234, A:A.238
- Hydrogen bonds: A:S.143
CPS.8: 14 residues within 4Å:- Chain A: V.144, G.147, M.148, V.151, L.230, A.233, I.234, D.237, A.238, I.241
- Chain D: I.137, A.140
- Ligands: CPS.7, CPS.34
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:V.144, A:L.230, A:A.233, A:I.234, A:D.237, A:I.241
- Hydrogen bonds: A:V.144, A:G.147, A:D.237
CPS.9: 6 residues within 4Å:- Chain A: L.49, S.52, T.54, F.55, F.59
- Ligands: PX4.11
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:L.49, A:T.54, A:F.55, A:F.59
- Hydrogen bonds: A:S.52, A:S.52
CPS.16: 12 residues within 4Å:- Chain B: A.140, S.143, V.144, I.234, A.238, I.241
- Chain D: V.232, A.233, V.236, D.237
- Ligands: CPS.17, CPS.35
6 PLIP interactions:2 interactions with chain D, 4 interactions with chain B- Hydrophobic interactions: D:A.233, D:V.236, B:V.144, B:I.234, B:A.238
- Hydrogen bonds: B:S.143
CPS.17: 14 residues within 4Å:- Chain B: V.144, G.147, M.148, V.151, L.230, A.233, I.234, D.237, A.238, I.241
- Chain C: I.137, A.140
- Ligands: CPS.16, CPS.25
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:V.144, B:L.230, B:A.233, B:I.234, B:D.237, B:I.241
- Hydrogen bonds: B:V.144, B:G.147, B:D.237
CPS.18: 6 residues within 4Å:- Chain B: L.49, S.52, T.54, F.55, F.59
- Ligands: PX4.2
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:L.49, B:T.54, B:F.55, B:F.59
- Hydrogen bonds: B:S.52, B:S.52
CPS.25: 12 residues within 4Å:- Chain B: V.232, A.233, V.236, D.237
- Chain C: A.140, S.143, V.144, I.234, A.238, I.241
- Ligands: CPS.17, CPS.26
6 PLIP interactions:4 interactions with chain C, 2 interactions with chain B- Hydrophobic interactions: C:V.144, C:I.234, C:A.238, B:A.233, B:V.236
- Hydrogen bonds: C:S.143
CPS.26: 14 residues within 4Å:- Chain A: I.137, A.140
- Chain C: V.144, G.147, M.148, V.151, L.230, A.233, I.234, D.237, A.238, I.241
- Ligands: CPS.7, CPS.25
9 PLIP interactions:9 interactions with chain C- Hydrophobic interactions: C:V.144, C:L.230, C:A.233, C:I.234, C:D.237, C:I.241
- Hydrogen bonds: C:V.144, C:G.147, C:D.237
CPS.27: 6 residues within 4Å:- Chain C: L.49, S.52, T.54, F.55, F.59
- Ligands: PX4.29
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:L.49, C:T.54, C:F.55, C:F.59
- Hydrogen bonds: C:S.52, C:S.52
CPS.34: 12 residues within 4Å:- Chain A: V.232, A.233, V.236, D.237
- Chain D: A.140, S.143, V.144, I.234, A.238, I.241
- Ligands: CPS.8, CPS.35
6 PLIP interactions:4 interactions with chain D, 2 interactions with chain A- Hydrophobic interactions: D:V.144, D:I.234, D:A.238, A:A.233, A:V.236
- Hydrogen bonds: D:S.143
CPS.35: 14 residues within 4Å:- Chain B: I.137, A.140
- Chain D: V.144, G.147, M.148, V.151, L.230, A.233, I.234, D.237, A.238, I.241
- Ligands: CPS.16, CPS.34
9 PLIP interactions:9 interactions with chain D- Hydrophobic interactions: D:V.144, D:L.230, D:A.233, D:I.234, D:D.237, D:I.241
- Hydrogen bonds: D:V.144, D:G.147, D:D.237
CPS.36: 6 residues within 4Å:- Chain D: L.49, S.52, T.54, F.55, F.59
- Ligands: PX4.20
6 PLIP interactions:6 interactions with chain D- Hydrophobic interactions: D:L.49, D:T.54, D:F.55, D:F.59
- Hydrogen bonds: D:S.52, D:S.52
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gamal El-Din, T.M. et al., Molecular dissection of multiphase inactivation of the bacterial sodium channel NaVAb. J. Gen. Physiol. (2019)
- Release Date
- 2018-12-19
- Peptides
- Ion transport protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
BD
B - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.33 Å
- Oligo State
- homo-tetramer
- Ligands
- 16 x PX4: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
- 4 x ACT: ACETATE ION(Non-functional Binders)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 12 x CPS: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gamal El-Din, T.M. et al., Molecular dissection of multiphase inactivation of the bacterial sodium channel NaVAb. J. Gen. Physiol. (2019)
- Release Date
- 2018-12-19
- Peptides
- Ion transport protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
BD
B - Membrane
-
We predict this structure to be a membrane protein.